Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS13405 and RR42_RS13410 are separated by 395 nucleotides RR42_RS13410 and RR42_RS13415 are separated by 752 nucleotides
RR42_RS13405: RR42_RS13405 - diguanylate cyclase, at 2,891,557 to 2,892,774
_RS13405
RR42_RS13410: RR42_RS13410 - tRNA-Pro, at 2,893,170 to 2,893,246
_RS13410
RR42_RS13415: RR42_RS13415 - translation initiation factor IF-1, at 2,893,999 to 2,894,220
_RS13415
Position (kb)
2893
2894 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2892.266 kb on + strand, within RR42_RS13405 at 2892.266 kb on + strand, within RR42_RS13405 at 2892.267 kb on - strand, within RR42_RS13405 at 2892.267 kb on - strand, within RR42_RS13405 at 2892.267 kb on - strand, within RR42_RS13405 at 2892.267 kb on - strand, within RR42_RS13405 at 2892.386 kb on + strand, within RR42_RS13405 at 2892.386 kb on + strand, within RR42_RS13405 at 2892.386 kb on + strand, within RR42_RS13405 at 2892.386 kb on + strand, within RR42_RS13405 at 2892.386 kb on + strand, within RR42_RS13405 at 2892.387 kb on - strand, within RR42_RS13405 at 2892.387 kb on - strand, within RR42_RS13405 at 2892.390 kb on + strand, within RR42_RS13405 at 2892.390 kb on + strand, within RR42_RS13405 at 2892.450 kb on - strand, within RR42_RS13405 at 2892.533 kb on + strand, within RR42_RS13405 at 2892.534 kb on - strand, within RR42_RS13405 at 2892.534 kb on - strand, within RR42_RS13405 at 2892.586 kb on - strand, within RR42_RS13405 at 2892.586 kb on - strand, within RR42_RS13405 at 2892.602 kb on + strand, within RR42_RS13405 at 2892.602 kb on + strand, within RR42_RS13405 at 2892.603 kb on - strand, within RR42_RS13405 at 2892.603 kb on - strand, within RR42_RS13405 at 2892.736 kb on + strand at 2892.736 kb on + strand at 2892.756 kb on + strand at 2892.756 kb on + strand at 2892.757 kb on - strand at 2893.027 kb on + strand at 2893.063 kb on + strand at 2893.063 kb on + strand at 2893.253 kb on - strand at 2893.258 kb on + strand at 2893.384 kb on + strand at 2893.384 kb on + strand at 2893.385 kb on - strand at 2893.508 kb on - strand at 2893.559 kb on + strand at 2893.559 kb on + strand at 2893.559 kb on + strand at 2893.561 kb on + strand at 2893.584 kb on + strand at 2893.584 kb on + strand at 2893.708 kb on + strand at 2893.960 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,892,266 + RR42_RS13405 0.58 -1.2 2,892,266 + RR42_RS13405 0.58 +0.0 2,892,267 - RR42_RS13405 0.58 -3.2 2,892,267 - RR42_RS13405 0.58 +1.1 2,892,267 - RR42_RS13405 0.58 -3.4 2,892,267 - RR42_RS13405 0.58 -2.8 2,892,386 + RR42_RS13405 0.68 -0.7 2,892,386 + RR42_RS13405 0.68 -1.2 2,892,386 + RR42_RS13405 0.68 -0.8 2,892,386 + RR42_RS13405 0.68 -1.7 2,892,386 + RR42_RS13405 0.68 +1.0 2,892,387 - RR42_RS13405 0.68 +1.0 2,892,387 - RR42_RS13405 0.68 -4.4 2,892,390 + RR42_RS13405 0.68 +0.2 2,892,390 + RR42_RS13405 0.68 -1.6 2,892,450 - RR42_RS13405 0.73 +0.3 2,892,533 + RR42_RS13405 0.80 +1.0 2,892,534 - RR42_RS13405 0.80 +0.6 2,892,534 - RR42_RS13405 0.80 +1.1 2,892,586 - RR42_RS13405 0.84 +1.9 2,892,586 - RR42_RS13405 0.84 +1.5 2,892,602 + RR42_RS13405 0.86 +0.5 2,892,602 + RR42_RS13405 0.86 -2.6 2,892,603 - RR42_RS13405 0.86 -0.8 2,892,603 - RR42_RS13405 0.86 +0.8 2,892,736 + +1.7 2,892,736 + +0.9 2,892,756 + -3.4 2,892,756 + -0.1 2,892,757 - +0.9 2,893,027 + +0.6 2,893,063 + -3.6 2,893,063 + +0.5 2,893,253 - +1.6 2,893,258 + -0.1 2,893,384 + +2.6 2,893,384 + -3.5 2,893,385 - -1.6 2,893,508 - +0.3 2,893,559 + -0.8 2,893,559 + +1.3 2,893,559 + +1.8 2,893,561 + +0.2 2,893,584 + -3.5 2,893,584 + -0.0 2,893,708 + -1.7 2,893,960 + -1.4
Or see this region's nucleotide sequence