Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS13140 and RR42_RS13145 are separated by 50 nucleotides RR42_RS13145 and RR42_RS13150 overlap by 8 nucleotides RR42_RS13150 and RR42_RS13155 overlap by 4 nucleotides
RR42_RS13140: RR42_RS13140 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 2,831,429 to 2,832,721
_RS13140
RR42_RS13145: RR42_RS13145 - DNA-binding protein, at 2,832,772 to 2,833,785
_RS13145
RR42_RS13150: RR42_RS13150 - pilus assembly protein PilW, at 2,833,778 to 2,834,557
_RS13150
RR42_RS13155: RR42_RS13155 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 2,834,554 to 2,835,708
_RS13155
Position (kb)
2832
2833
2834 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 2832.728 kb on - strand at 2832.728 kb on - strand at 2832.895 kb on - strand, within RR42_RS13145 at 2833.791 kb on - strand at 2833.957 kb on - strand, within RR42_RS13150 at 2833.990 kb on - strand, within RR42_RS13150 at 2833.990 kb on - strand, within RR42_RS13150 at 2833.990 kb on - strand, within RR42_RS13150 at 2834.167 kb on - strand, within RR42_RS13150 at 2834.215 kb on - strand, within RR42_RS13150 at 2834.215 kb on - strand, within RR42_RS13150 at 2834.215 kb on - strand, within RR42_RS13150 at 2834.305 kb on - strand, within RR42_RS13150 at 2834.305 kb on - strand, within RR42_RS13150 at 2834.326 kb on - strand, within RR42_RS13150 at 2834.389 kb on - strand, within RR42_RS13150 at 2834.407 kb on - strand, within RR42_RS13150
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,832,728 - +5.1 2,832,728 - +3.2 2,832,895 - RR42_RS13145 0.12 +0.9 2,833,791 - +2.8 2,833,957 - RR42_RS13150 0.23 -2.1 2,833,990 - RR42_RS13150 0.27 -1.5 2,833,990 - RR42_RS13150 0.27 -0.3 2,833,990 - RR42_RS13150 0.27 +0.6 2,834,167 - RR42_RS13150 0.50 -1.1 2,834,215 - RR42_RS13150 0.56 +1.5 2,834,215 - RR42_RS13150 0.56 -2.5 2,834,215 - RR42_RS13150 0.56 +0.8 2,834,305 - RR42_RS13150 0.68 +0.2 2,834,305 - RR42_RS13150 0.68 +3.0 2,834,326 - RR42_RS13150 0.70 +2.1 2,834,389 - RR42_RS13150 0.78 -1.3 2,834,407 - RR42_RS13150 0.81 +2.6
Or see this region's nucleotide sequence