Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12960

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,788,261	-		RR42_RS12955	0.20	+0.1
2,788,472	+		RR42_RS12955	0.39	-1.8
2,788,472	+		RR42_RS12955	0.39	-0.4
2,788,472	+		RR42_RS12955	0.39	+0.2
2,788,473	-		RR42_RS12955	0.40	+1.8
2,788,473	-		RR42_RS12955	0.40	+0.0
2,788,473	-		RR42_RS12955	0.40	-0.3
2,788,571	+		RR42_RS12955	0.48	-2.5
2,788,571	+		RR42_RS12955	0.48	+1.3
2,788,571	+				-0.6
2,788,571	+		RR42_RS12955	0.48	+0.1
2,788,571	+		RR42_RS12955	0.48	-2.1
2,788,571	+		RR42_RS12955	0.48	+0.6
2,788,572	-		RR42_RS12955	0.49	-3.1
2,788,572	-		RR42_RS12955	0.49	+0.5
2,788,572	-		RR42_RS12955	0.49	+2.1
2,788,572	-		RR42_RS12955	0.49	+0.1
2,788,572	-		RR42_RS12955	0.49	-1.8
2,788,572	-		RR42_RS12955	0.49	+0.7
2,788,572	-		RR42_RS12955	0.49	-0.9
2,788,572	-		RR42_RS12955	0.49	+0.5
2,788,572	-		RR42_RS12955	0.49	-2.1
2,788,572	-		RR42_RS12955	0.49	-0.2
2,788,572	-		RR42_RS12955	0.49	+1.0
2,788,691	-		RR42_RS12955	0.59	+1.5
2,788,691	-		RR42_RS12955	0.59	+0.7
2,788,851	+		RR42_RS12955	0.74	-0.6
2,788,851	+		RR42_RS12955	0.74	-1.5
2,788,852	-		RR42_RS12955	0.74	-0.8
2,788,869	+		RR42_RS12955	0.75	+0.3
2,788,869	+		RR42_RS12955	0.75	+0.2
2,788,878	-		RR42_RS12955	0.76	+1.3
2,788,953	+		RR42_RS12955	0.83	-1.4
2,788,953	+		RR42_RS12955	0.83	+0.7
2,788,954	-		RR42_RS12955	0.83	-1.1
2,788,954	-		RR42_RS12955	0.83	+2.6
2,788,954	-		RR42_RS12955	0.83	+1.6
2,789,102	+				+0.1
2,789,103	-				+1.5
2,789,103	-				+1.4
2,789,114	-				+0.6
2,789,143	+				-0.3
2,789,144	-				-0.7
2,789,144	-				-3.8
2,789,144	-				+0.6
2,789,144	-				+2.2
2,789,144	-				+1.5
2,789,413	+		RR42_RS12960	0.24	+2.8
2,789,429	-		RR42_RS12960	0.26	-3.4
2,789,429	-		RR42_RS12960	0.26	+0.4
2,789,623	+		RR42_RS12960	0.49	-2.9
2,789,659	+		RR42_RS12960	0.53	+1.2
2,789,659	+		RR42_RS12960	0.53	-0.0
2,789,747	-		RR42_RS12960	0.63	+0.0
2,789,747	-		RR42_RS12960	0.63	-0.2
2,789,884	+		RR42_RS12960	0.80	+1.3
2,789,884	+		RR42_RS12960	0.80	-0.3
2,789,974	+				+1.5
2,789,974	+				-0.1
2,789,975	-				+0.7
2,789,975	-				-0.7
2,789,975	-				+0.3
2,789,975	-				-0.3
2,789,975	-				+1.3
2,789,975	-				-0.9
2,790,074	-				-2.2
2,790,194	-		RR42_RS12965	0.14	+1.3
2,790,202	+		RR42_RS12965	0.15	+0.2
2,790,202	+		RR42_RS12965	0.15	-0.8
2,790,202	+		RR42_RS12965	0.15	+0.1
2,790,212	+		RR42_RS12965	0.16	-0.6
2,790,212	+		RR42_RS12965	0.16	+0.3
2,790,212	+		RR42_RS12965	0.16	+1.1
2,790,212	+		RR42_RS12965	0.16	+1.3
2,790,212	+		RR42_RS12965	0.16	+0.2
2,790,213	-		RR42_RS12965	0.16	-4.1
2,790,280	+		RR42_RS12965	0.24	+0.6
2,790,280	+		RR42_RS12965	0.24	+0.5
2,790,281	-		RR42_RS12965	0.24	+0.5
2,790,281	-		RR42_RS12965	0.24	+0.0
2,790,281	-		RR42_RS12965	0.24	-1.4
2,790,333	+		RR42_RS12965	0.30	-1.1
2,790,398	+		RR42_RS12965	0.37	+1.0
2,790,399	-		RR42_RS12965	0.37	+0.8
2,790,439	+		RR42_RS12965	0.42	+0.6
2,790,440	-		RR42_RS12965	0.42	+0.5
2,790,538	+		RR42_RS12965	0.53	+1.2
2,790,611	-		RR42_RS12965	0.61	+0.5
2,790,670	+		RR42_RS12965	0.68	+0.8
2,790,670	+		RR42_RS12965	0.68	-2.0
2,790,751	+		RR42_RS12965	0.77	+0.1
2,790,842	-		RR42_RS12965	0.88	+0.1
2,790,842	-		RR42_RS12965	0.88	-2.0
2,790,910	+				-1.9
2,790,911	-				+1.3
2,790,993	+				-1.1
2,790,993	+				-1.6
2,790,993	+				+2.2
2,790,994	-				+1.7
2,790,994	-				-1.4
2,790,997	+				-0.7
2,790,997	+				+0.5
2,790,998	-				+0.7
2,790,998	-				-3.3