Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12865

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS12860 and RR42_RS12865 are separated by 5 nucleotidesRR42_RS12865 and RR42_RS12870 are separated by 591 nucleotides RR42_RS12860: RR42_RS12860 - pseudouridine synthase, at 2,764,268 to 2,766,184 _RS12860 RR42_RS12865: RR42_RS12865 - SMC-Scp complex subunit ScpB, at 2,766,190 to 2,767,266 _RS12865 RR42_RS12870: RR42_RS12870 - membrane protein, at 2,767,858 to 2,768,622 _RS12870 Position (kb) 2766 2767 2768Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2766.296 kb on - strandat 2766.478 kb on - strand, within RR42_RS12865at 2767.415 kb on - strandat 2767.415 kb on - strandat 2767.468 kb on - strandat 2767.591 kb on - strandat 2767.777 kb on - strandat 2767.816 kb on + strandat 2767.839 kb on + strandat 2767.839 kb on + strandat 2767.840 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,766,296 - +1.7
2,766,478 - RR42_RS12865 0.27 +0.2
2,767,415 - +1.8
2,767,415 - -0.6
2,767,468 - +0.7
2,767,591 - +0.9
2,767,777 - +1.7
2,767,816 + -0.6
2,767,839 + -0.6
2,767,839 + +0.4
2,767,840 - -3.7

Or see this region's nucleotide sequence