Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12580
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
2,702,850 | + | RR42_RS12575 | 0.16 | +0.5 | |
2,702,851 | - | RR42_RS12575 | 0.16 | +2.3 | |
2,703,017 | + | RR42_RS12575 | 0.32 | +1.3 | |
2,703,017 | + | RR42_RS12575 | 0.32 | +1.3 | |
2,703,017 | + | RR42_RS12575 | 0.32 | +1.7 | |
2,703,018 | - | RR42_RS12575 | 0.32 | -0.5 | |
2,703,144 | - | RR42_RS12575 | 0.45 | +1.1 | |
2,703,144 | - | RR42_RS12575 | 0.45 | +1.7 | |
2,703,280 | - | RR42_RS12575 | 0.58 | +1.7 | |
2,703,389 | - | RR42_RS12575 | 0.69 | +1.9 | |
2,703,395 | + | RR42_RS12575 | 0.70 | +2.1 | |
2,703,395 | + | RR42_RS12575 | 0.70 | +1.8 | |
2,703,396 | - | RR42_RS12575 | 0.70 | +2.2 | |
2,703,398 | + | RR42_RS12575 | 0.70 | +1.9 | |
2,703,399 | - | RR42_RS12575 | 0.70 | +1.9 | |
2,703,453 | - | RR42_RS12575 | 0.75 | +0.8 | |
2,703,466 | - | RR42_RS12575 | 0.77 | +1.3 | |
2,703,466 | - | RR42_RS12575 | 0.77 | +2.3 | |
2,703,795 | + | RR42_RS12580 | 0.13 | +1.1 | |
2,703,796 | - | RR42_RS12580 | 0.13 | +5.5 | |
2,703,956 | + | RR42_RS12580 | 0.38 | +2.4 | |
2,704,299 | + | +2.1 | |||
2,704,300 | - | +4.3 | |||
2,704,379 | + | +2.2 | |||
2,704,380 | - | +0.9 | |||
2,704,380 | - | -0.1 | |||
2,704,383 | + | +3.3 | |||
2,704,384 | - | -0.6 | |||
2,704,407 | - | +0.9 |
Or see this region's nucleotide sequence