Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12580

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS12575 and RR42_RS12580 are separated by 13 nucleotidesRR42_RS12580 and RR42_RS12585 are separated by 211 nucleotides RR42_RS12575: RR42_RS12575 - inorganic phosphate transporter, at 2,702,692 to 2,703,702 _RS12575 RR42_RS12580: RR42_RS12580 - phosphate transport regulator, at 2,703,716 to 2,704,342 _RS12580 RR42_RS12585: RR42_RS12585 - DNA helicase, at 2,704,554 to 2,705,945 _RS12585 Position (kb) 2703 2704 2705Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2702.850 kb on + strand, within RR42_RS12575at 2702.851 kb on - strand, within RR42_RS12575at 2703.017 kb on + strand, within RR42_RS12575at 2703.017 kb on + strand, within RR42_RS12575at 2703.017 kb on + strand, within RR42_RS12575at 2703.018 kb on - strand, within RR42_RS12575at 2703.144 kb on - strand, within RR42_RS12575at 2703.144 kb on - strand, within RR42_RS12575at 2703.280 kb on - strand, within RR42_RS12575at 2703.389 kb on - strand, within RR42_RS12575at 2703.395 kb on + strand, within RR42_RS12575at 2703.395 kb on + strand, within RR42_RS12575at 2703.396 kb on - strand, within RR42_RS12575at 2703.398 kb on + strand, within RR42_RS12575at 2703.399 kb on - strand, within RR42_RS12575at 2703.453 kb on - strand, within RR42_RS12575at 2703.466 kb on - strand, within RR42_RS12575at 2703.466 kb on - strand, within RR42_RS12575at 2703.795 kb on + strand, within RR42_RS12580at 2703.796 kb on - strand, within RR42_RS12580at 2703.956 kb on + strand, within RR42_RS12580at 2704.299 kb on + strandat 2704.300 kb on - strandat 2704.379 kb on + strandat 2704.380 kb on - strandat 2704.380 kb on - strandat 2704.383 kb on + strandat 2704.384 kb on - strandat 2704.407 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,702,850 + RR42_RS12575 0.16 +0.5
2,702,851 - RR42_RS12575 0.16 +2.3
2,703,017 + RR42_RS12575 0.32 +1.3
2,703,017 + RR42_RS12575 0.32 +1.3
2,703,017 + RR42_RS12575 0.32 +1.7
2,703,018 - RR42_RS12575 0.32 -0.5
2,703,144 - RR42_RS12575 0.45 +1.1
2,703,144 - RR42_RS12575 0.45 +1.7
2,703,280 - RR42_RS12575 0.58 +1.7
2,703,389 - RR42_RS12575 0.69 +1.9
2,703,395 + RR42_RS12575 0.70 +2.1
2,703,395 + RR42_RS12575 0.70 +1.8
2,703,396 - RR42_RS12575 0.70 +2.2
2,703,398 + RR42_RS12575 0.70 +1.9
2,703,399 - RR42_RS12575 0.70 +1.9
2,703,453 - RR42_RS12575 0.75 +0.8
2,703,466 - RR42_RS12575 0.77 +1.3
2,703,466 - RR42_RS12575 0.77 +2.3
2,703,795 + RR42_RS12580 0.13 +1.1
2,703,796 - RR42_RS12580 0.13 +5.5
2,703,956 + RR42_RS12580 0.38 +2.4
2,704,299 + +2.1
2,704,300 - +4.3
2,704,379 + +2.2
2,704,380 - +0.9
2,704,380 - -0.1
2,704,383 + +3.3
2,704,384 - -0.6
2,704,407 - +0.9

Or see this region's nucleotide sequence