Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12340

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,647,512	+		RR42_RS12335	0.48	-0.5
2,647,512	+		RR42_RS12335	0.48	+0.0
2,647,513	-		RR42_RS12335	0.48	+2.1
2,647,615	-		RR42_RS12335	0.56	+1.7
2,647,665	+		RR42_RS12335	0.60	-2.0
2,647,665	+		RR42_RS12335	0.60	+1.2
2,647,666	-		RR42_RS12335	0.60	-1.5
2,647,666	-		RR42_RS12335	0.60	+1.8
2,647,813	-		RR42_RS12335	0.71	-2.3
2,648,002	-		RR42_RS12335	0.86	+1.7
2,648,168	-				+1.3
2,648,169	+				+0.5
2,648,169	+				-3.7
2,648,169	+				-0.5
2,648,169	+				-2.5
2,648,170	-				+0.5
2,648,170	-				+0.4
2,648,287	+		RR42_RS12340	0.10	+0.6
2,648,402	+		RR42_RS12340	0.22	-4.0
2,648,403	-		RR42_RS12340	0.22	+0.3
2,648,403	-		RR42_RS12340	0.22	+0.5
2,648,407	+		RR42_RS12340	0.23	-1.9
2,648,407	+		RR42_RS12340	0.23	+0.9
2,648,407	+		RR42_RS12340	0.23	+1.2
2,648,408	-		RR42_RS12340	0.23	+0.2
2,648,448	+		RR42_RS12340	0.27	+0.4
2,648,606	+		RR42_RS12340	0.43	+0.1
2,648,606	+		RR42_RS12340	0.43	+0.7
2,648,606	+		RR42_RS12340	0.43	-0.3
2,648,606	+		RR42_RS12340	0.43	-1.0
2,648,607	-		RR42_RS12340	0.43	+1.0
2,648,791	+		RR42_RS12340	0.62	-0.9
2,648,792	-		RR42_RS12340	0.62	-0.3
2,648,837	+		RR42_RS12340	0.67	-3.6
2,648,838	-		RR42_RS12340	0.67	+1.2
2,648,838	-		RR42_RS12340	0.67	+1.6
2,648,838	-		RR42_RS12340	0.67	+0.2
2,648,841	+		RR42_RS12340	0.67	-0.5
2,648,857	-		RR42_RS12340	0.69	-1.1
2,649,180	+				-2.9
2,649,181	-				-2.4
2,649,233	+				-2.2
2,649,234	-				-0.7
2,649,257	+				+0.5
2,649,258	-				+0.5
2,649,698	-		RR42_RS12345	0.25	-0.8
2,649,876	+		RR42_RS12345	0.58	-1.0
2,650,104	+				-0.9
2,650,156	+				-1.0