Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS12220

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,626,458	+		RR42_RS12210	0.46	+0.3
2,626,459	-		RR42_RS12210	0.47	-1.8
2,626,531	+		RR42_RS12210	0.64	+0.8
2,626,531	+		RR42_RS12210	0.64	-2.7
2,626,546	+		RR42_RS12210	0.68	-2.5
2,626,547	-		RR42_RS12210	0.68	-0.2
2,626,547	-		RR42_RS12210	0.68	-2.9
2,626,725	+				+1.9
2,626,725	+				+1.4
2,626,725	+				-3.3
2,626,725	+				+0.9
2,626,725	+				-1.0
2,626,726	-		RR42_RS12215	0.10	-3.7
2,627,094	-		RR42_RS12215	0.84	+0.6
2,627,094	-		RR42_RS12215	0.84	+0.9
2,627,161	+				-2.5
2,627,161	+				+0.2
2,627,161	+				+0.7
2,627,451	+		RR42_RS12220	0.17	-1.9
2,627,574	-		RR42_RS12220	0.26	+1.6
2,627,701	+		RR42_RS12220	0.36	+1.0
2,627,701	+		RR42_RS12220	0.36	-1.5
2,627,701	+		RR42_RS12220	0.36	-0.9
2,627,701	+		RR42_RS12220	0.36	-0.2
2,627,701	+		RR42_RS12220	0.36	-0.5
2,627,701	+		RR42_RS12220	0.36	-1.9
2,627,701	+		RR42_RS12220	0.36	-1.8
2,627,701	+		RR42_RS12220	0.36	+1.1
2,627,702	-		RR42_RS12220	0.36	-0.7
2,627,702	-		RR42_RS12220	0.36	+0.7
2,627,702	-		RR42_RS12220	0.36	-0.7
2,627,702	-		RR42_RS12220	0.36	+0.7
2,627,702	-		RR42_RS12220	0.36	-2.7
2,627,702	-		RR42_RS12220	0.36	+1.9
2,627,702	-		RR42_RS12220	0.36	-0.2
2,627,702	-		RR42_RS12220	0.36	-1.3
2,627,702	-		RR42_RS12220	0.36	+1.5
2,627,702	-		RR42_RS12220	0.36	-3.4
2,627,702	-		RR42_RS12220	0.36	-3.0
2,627,702	-		RR42_RS12220	0.36	+0.6
2,627,702	-		RR42_RS12220	0.36	-0.9
2,627,703	+		RR42_RS12220	0.36	-4.2
2,627,704	-		RR42_RS12220	0.37	-2.4
2,627,704	-		RR42_RS12220	0.37	+1.3
2,627,712	+		RR42_RS12220	0.37	+0.2
2,627,713	-		RR42_RS12220	0.37	-0.6
2,627,745	+		RR42_RS12220	0.40	-0.9
2,627,745	+		RR42_RS12220	0.40	+0.2
2,628,198	+		RR42_RS12220	0.75	-1.0
2,628,199	-		RR42_RS12220	0.75	+2.5
2,628,360	+		RR42_RS12220	0.88	+0.4
2,628,360	+		RR42_RS12220	0.88	-1.5
2,628,360	+		RR42_RS12220	0.88	+1.2
2,628,360	+		RR42_RS12220	0.88	-1.5
2,628,360	+		RR42_RS12220	0.88	-0.2
2,628,523	+				-0.8
2,628,596	+				-2.7
2,628,596	+				+0.2
2,628,597	-				-0.8
2,628,597	-				-1.0
2,628,597	-				+0.6
2,628,597	-				-2.3
2,628,597	-				+1.5
2,628,602	-				-0.5
2,628,653	-				-4.3
2,628,653	-				+0.7
2,628,658	+				+1.5
2,628,658	+				-1.7
2,628,659	-				+1.0
2,628,659	-				-1.7
2,628,868	+		RR42_RS12225	0.28	-0.4
2,628,868	+		RR42_RS12225	0.28	-0.2
2,628,868	+		RR42_RS12225	0.28	+1.2
2,628,868	+		RR42_RS12225	0.28	-1.7
2,628,868	+		RR42_RS12225	0.28	+1.2
2,628,869	-		RR42_RS12225	0.28	-2.2
2,628,889	+		RR42_RS12225	0.31	-0.0
2,628,889	+		RR42_RS12225	0.31	+1.7
2,628,890	-		RR42_RS12225	0.31	-1.5
2,628,890	-		RR42_RS12225	0.31	-1.7
2,628,890	-		RR42_RS12225	0.31	+2.2
2,628,944	+		RR42_RS12225	0.37	+0.9
2,628,945	-		RR42_RS12225	0.38	-2.8
2,628,956	-		RR42_RS12225	0.39	+1.1
2,628,956	-		RR42_RS12225	0.39	+0.7
2,629,162	+		RR42_RS12225	0.64	-2.7
2,629,208	-		RR42_RS12225	0.69	+1.2
2,629,475	+				-0.4
2,629,476	-				-1.5
2,629,476	-				+1.0
2,629,501	+				+1.0
2,629,502	-				+1.8
2,629,502	-				+1.5