Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS11930 and RR42_RS11935 are separated by 94 nucleotides RR42_RS11935 and RR42_RS11940 are separated by 142 nucleotides RR42_RS11940 and RR42_RS11945 are separated by 50 nucleotides
RR42_RS11930: RR42_RS11930 - succinyldiaminopimelate aminotransferase, at 2,557,036 to 2,558,253
_RS11930
RR42_RS11935: RR42_RS11935 - 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase, at 2,558,348 to 2,559,175
_RS11935
RR42_RS11940: RR42_RS11940 - membrane protein, at 2,559,318 to 2,559,725
_RS11940
RR42_RS11945: RR42_RS11945 - ArsC family transcriptional regulator, at 2,559,776 to 2,560,123
_RS11945
Position (kb)
2558
2559
2560 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2557.423 kb on + strand, within RR42_RS11930 at 2557.669 kb on + strand, within RR42_RS11930 at 2557.669 kb on + strand, within RR42_RS11930 at 2557.853 kb on + strand, within RR42_RS11930 at 2557.853 kb on + strand, within RR42_RS11930 at 2557.860 kb on + strand, within RR42_RS11930 at 2557.860 kb on + strand, within RR42_RS11930 at 2557.860 kb on + strand, within RR42_RS11930 at 2557.864 kb on + strand, within RR42_RS11930 at 2557.864 kb on + strand, within RR42_RS11930 at 2557.864 kb on + strand, within RR42_RS11930 at 2558.307 kb on + strand at 2558.317 kb on + strand at 2558.317 kb on + strand at 2559.769 kb on + strand at 2559.791 kb on + strand at 2559.792 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,557,423 + RR42_RS11930 0.32 -2.5 2,557,669 + RR42_RS11930 0.52 +0.5 2,557,669 + RR42_RS11930 0.52 -2.4 2,557,853 + RR42_RS11930 0.67 -1.1 2,557,853 + RR42_RS11930 0.67 -3.8 2,557,860 + RR42_RS11930 0.68 +1.4 2,557,860 + RR42_RS11930 0.68 +0.9 2,557,860 + RR42_RS11930 0.68 +0.8 2,557,864 + RR42_RS11930 0.68 -1.7 2,557,864 + RR42_RS11930 0.68 +0.8 2,557,864 + RR42_RS11930 0.68 -0.3 2,558,307 + +1.5 2,558,317 + +0.5 2,558,317 + +0.2 2,559,769 + -2.6 2,559,791 + -4.4 2,559,792 - -3.6
Or see this region's nucleotide sequence