Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS11515 and RR42_RS11520 overlap by 4 nucleotides RR42_RS11520 and RR42_RS11525 overlap by 1 nucleotides
RR42_RS11510: RR42_RS11510 - branched-chain amino acid ABC transporter substrate-binding protein, at 2,461,079 to 2,462,260
_RS11510
RR42_RS11515: RR42_RS11515 - hypothetical protein, at 2,462,253 to 2,463,263
_RS11515
RR42_RS11520: RR42_RS11520 - ABC transporter ATP-binding protein, at 2,463,260 to 2,464,048
_RS11520
RR42_RS11525: RR42_RS11525 - hypothetical protein, at 2,464,048 to 2,465,043
_RS11525
Position (kb)
2463
2464
2465 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2462.365 kb on + strand, within RR42_RS11515 at 2462.366 kb on - strand, within RR42_RS11515 at 2462.366 kb on - strand, within RR42_RS11515 at 2462.425 kb on + strand, within RR42_RS11515 at 2462.425 kb on + strand, within RR42_RS11515 at 2462.426 kb on - strand, within RR42_RS11515 at 2462.426 kb on - strand, within RR42_RS11515 at 2462.426 kb on - strand, within RR42_RS11515 at 2462.489 kb on + strand, within RR42_RS11515 at 2462.491 kb on + strand, within RR42_RS11515 at 2462.491 kb on + strand, within RR42_RS11515 at 2462.491 kb on + strand, within RR42_RS11515 at 2462.492 kb on - strand, within RR42_RS11515 at 2462.492 kb on - strand, within RR42_RS11515 at 2462.492 kb on - strand, within RR42_RS11515 at 2462.492 kb on - strand, within RR42_RS11515 at 2462.699 kb on + strand, within RR42_RS11515 at 2462.767 kb on + strand, within RR42_RS11515 at 2462.767 kb on + strand, within RR42_RS11515 at 2462.767 kb on + strand, within RR42_RS11515 at 2462.768 kb on - strand, within RR42_RS11515 at 2462.768 kb on - strand, within RR42_RS11515 at 2462.768 kb on - strand, within RR42_RS11515 at 2462.768 kb on - strand, within RR42_RS11515 at 2462.893 kb on + strand, within RR42_RS11515 at 2463.019 kb on + strand, within RR42_RS11515 at 2463.019 kb on + strand, within RR42_RS11515 at 2463.019 kb on + strand, within RR42_RS11515 at 2463.109 kb on + strand, within RR42_RS11515 at 2463.110 kb on - strand, within RR42_RS11515 at 2463.835 kb on + strand, within RR42_RS11520 at 2463.836 kb on - strand, within RR42_RS11520 at 2464.124 kb on + strand at 2464.152 kb on - strand, within RR42_RS11525 at 2464.202 kb on + strand, within RR42_RS11525 at 2464.203 kb on - strand, within RR42_RS11525 at 2464.733 kb on + strand, within RR42_RS11525 at 2464.764 kb on - strand, within RR42_RS11525 at 2464.890 kb on + strand, within RR42_RS11525 at 2464.890 kb on + strand, within RR42_RS11525
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,462,365 + RR42_RS11515 0.11 -1.8 2,462,366 - RR42_RS11515 0.11 +1.8 2,462,366 - RR42_RS11515 0.11 -0.6 2,462,425 + RR42_RS11515 0.17 -2.8 2,462,425 + RR42_RS11515 0.17 -1.9 2,462,426 - RR42_RS11515 0.17 -0.7 2,462,426 - RR42_RS11515 0.17 +0.2 2,462,426 - RR42_RS11515 0.17 -3.1 2,462,489 + RR42_RS11515 0.23 -2.5 2,462,491 + RR42_RS11515 0.24 -0.1 2,462,491 + RR42_RS11515 0.24 +1.2 2,462,491 + RR42_RS11515 0.24 +1.1 2,462,492 - RR42_RS11515 0.24 +0.3 2,462,492 - RR42_RS11515 0.24 -0.1 2,462,492 - RR42_RS11515 0.24 +0.3 2,462,492 - RR42_RS11515 0.24 +0.0 2,462,699 + RR42_RS11515 0.44 +1.0 2,462,767 + RR42_RS11515 0.51 +0.1 2,462,767 + RR42_RS11515 0.51 -1.5 2,462,767 + RR42_RS11515 0.51 +0.2 2,462,768 - RR42_RS11515 0.51 -0.9 2,462,768 - RR42_RS11515 0.51 -1.1 2,462,768 - RR42_RS11515 0.51 -2.9 2,462,768 - RR42_RS11515 0.51 +0.5 2,462,893 + RR42_RS11515 0.63 -0.6 2,463,019 + RR42_RS11515 0.76 +0.5 2,463,019 + RR42_RS11515 0.76 +1.0 2,463,019 + RR42_RS11515 0.76 -2.3 2,463,109 + RR42_RS11515 0.85 +2.8 2,463,110 - RR42_RS11515 0.85 +0.3 2,463,835 + RR42_RS11520 0.73 +1.6 2,463,836 - RR42_RS11520 0.73 -4.1 2,464,124 + -3.0 2,464,152 - RR42_RS11525 0.10 +0.9 2,464,202 + RR42_RS11525 0.15 +0.7 2,464,203 - RR42_RS11525 0.16 +0.6 2,464,733 + RR42_RS11525 0.69 -1.7 2,464,764 - RR42_RS11525 0.72 -0.9 2,464,890 + RR42_RS11525 0.85 +0.3 2,464,890 + RR42_RS11525 0.85 -1.4
Or see this region's nucleotide sequence