Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11260

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS11255 and RR42_RS11260 are separated by 359 nucleotidesRR42_RS11260 and RR42_RS11265 are separated by 73 nucleotides RR42_RS11255: RR42_RS11255 - Fis family transcriptional regulator, at 2,404,840 to 2,406,801 _RS11255 RR42_RS11260: RR42_RS11260 - Methylisocitrate lyase (EC 4.1.3.30) (from data), at 2,407,161 to 2,408,069 _RS11260 RR42_RS11265: RR42_RS11265 - methylcitrate synthase, at 2,408,143 to 2,409,300 _RS11265 Position (kb) 2407 2408 2409Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2406.164 kb on + strand, within RR42_RS11255at 2406.164 kb on + strand, within RR42_RS11255at 2406.165 kb on - strand, within RR42_RS11255at 2406.165 kb on - strand, within RR42_RS11255at 2406.165 kb on - strand, within RR42_RS11255at 2406.165 kb on - strand, within RR42_RS11255at 2406.165 kb on - strand, within RR42_RS11255at 2406.237 kb on - strand, within RR42_RS11255at 2406.237 kb on - strand, within RR42_RS11255at 2406.321 kb on - strand, within RR42_RS11255at 2406.446 kb on + strand, within RR42_RS11255at 2406.447 kb on - strand, within RR42_RS11255at 2406.447 kb on - strand, within RR42_RS11255at 2406.452 kb on + strand, within RR42_RS11255at 2406.452 kb on + strand, within RR42_RS11255at 2406.453 kb on - strand, within RR42_RS11255at 2406.453 kb on - strand, within RR42_RS11255at 2406.453 kb on - strand, within RR42_RS11255at 2406.503 kb on + strand, within RR42_RS11255at 2406.629 kb on + strandat 2406.713 kb on + strandat 2406.895 kb on + strandat 2407.148 kb on + strandat 2407.148 kb on + strandat 2407.305 kb on + strand, within RR42_RS11260at 2407.305 kb on + strand, within RR42_RS11260at 2407.305 kb on + strand, within RR42_RS11260at 2407.306 kb on - strand, within RR42_RS11260at 2407.306 kb on - strand, within RR42_RS11260at 2407.306 kb on - strand, within RR42_RS11260at 2407.881 kb on + strand, within RR42_RS11260at 2407.881 kb on + strand, within RR42_RS11260at 2407.929 kb on + strand, within RR42_RS11260at 2407.930 kb on - strand, within RR42_RS11260at 2407.930 kb on - strand, within RR42_RS11260at 2407.930 kb on - strand, within RR42_RS11260at 2408.022 kb on + strandat 2408.022 kb on + strandat 2408.023 kb on - strandat 2408.023 kb on - strandat 2408.067 kb on + strandat 2408.068 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,406,164 + RR42_RS11255 0.67 +1.0
2,406,164 + RR42_RS11255 0.67 -3.2
2,406,165 - RR42_RS11255 0.68 +1.2
2,406,165 - RR42_RS11255 0.68 +1.3
2,406,165 - RR42_RS11255 0.68 +0.2
2,406,165 - RR42_RS11255 0.68 +1.0
2,406,165 - RR42_RS11255 0.68 +1.2
2,406,237 - RR42_RS11255 0.71 +1.2
2,406,237 - RR42_RS11255 0.71 +1.1
2,406,321 - RR42_RS11255 0.75 +1.6
2,406,446 + RR42_RS11255 0.82 -0.8
2,406,447 - RR42_RS11255 0.82 -1.9
2,406,447 - RR42_RS11255 0.82 +0.3
2,406,452 + RR42_RS11255 0.82 +0.1
2,406,452 + RR42_RS11255 0.82 +0.7
2,406,453 - RR42_RS11255 0.82 +1.3
2,406,453 - RR42_RS11255 0.82 +2.3
2,406,453 - RR42_RS11255 0.82 +1.5
2,406,503 + RR42_RS11255 0.85 -4.0
2,406,629 + -0.1
2,406,713 + +0.5
2,406,895 + +1.1
2,407,148 + +2.1
2,407,148 + +0.9
2,407,305 + RR42_RS11260 0.16 -3.7
2,407,305 + RR42_RS11260 0.16 -3.6
2,407,305 + RR42_RS11260 0.16 +0.8
2,407,306 - RR42_RS11260 0.16 -2.2
2,407,306 - RR42_RS11260 0.16 -2.0
2,407,306 - RR42_RS11260 0.16 +0.5
2,407,881 + RR42_RS11260 0.79 -4.2
2,407,881 + RR42_RS11260 0.79 -3.3
2,407,929 + RR42_RS11260 0.84 -1.8
2,407,930 - RR42_RS11260 0.85 -1.6
2,407,930 - RR42_RS11260 0.85 -3.0
2,407,930 - RR42_RS11260 0.85 -2.3
2,408,022 + +1.9
2,408,022 + -1.4
2,408,023 - -2.0
2,408,023 - +0.9
2,408,067 + -0.0
2,408,068 - -3.9

Or see this region's nucleotide sequence