Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS11255 and RR42_RS11260 are separated by 359 nucleotides RR42_RS11260 and RR42_RS11265 are separated by 73 nucleotides
RR42_RS11255: RR42_RS11255 - Fis family transcriptional regulator, at 2,404,840 to 2,406,801
_RS11255
RR42_RS11260: RR42_RS11260 - Methylisocitrate lyase (EC 4.1.3.30) (from data) , at 2,407,161 to 2,408,069
_RS11260
RR42_RS11265: RR42_RS11265 - methylcitrate synthase, at 2,408,143 to 2,409,300
_RS11265
Position (kb)
2407
2408
2409 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2406.164 kb on + strand, within RR42_RS11255 at 2406.164 kb on + strand, within RR42_RS11255 at 2406.165 kb on - strand, within RR42_RS11255 at 2406.165 kb on - strand, within RR42_RS11255 at 2406.165 kb on - strand, within RR42_RS11255 at 2406.165 kb on - strand, within RR42_RS11255 at 2406.165 kb on - strand, within RR42_RS11255 at 2406.237 kb on - strand, within RR42_RS11255 at 2406.237 kb on - strand, within RR42_RS11255 at 2406.321 kb on - strand, within RR42_RS11255 at 2406.446 kb on + strand, within RR42_RS11255 at 2406.447 kb on - strand, within RR42_RS11255 at 2406.447 kb on - strand, within RR42_RS11255 at 2406.452 kb on + strand, within RR42_RS11255 at 2406.452 kb on + strand, within RR42_RS11255 at 2406.453 kb on - strand, within RR42_RS11255 at 2406.453 kb on - strand, within RR42_RS11255 at 2406.453 kb on - strand, within RR42_RS11255 at 2406.503 kb on + strand, within RR42_RS11255 at 2406.629 kb on + strand at 2406.713 kb on + strand at 2406.895 kb on + strand at 2407.148 kb on + strand at 2407.148 kb on + strand at 2407.305 kb on + strand, within RR42_RS11260 at 2407.305 kb on + strand, within RR42_RS11260 at 2407.305 kb on + strand, within RR42_RS11260 at 2407.306 kb on - strand, within RR42_RS11260 at 2407.306 kb on - strand, within RR42_RS11260 at 2407.306 kb on - strand, within RR42_RS11260 at 2407.881 kb on + strand, within RR42_RS11260 at 2407.881 kb on + strand, within RR42_RS11260 at 2407.929 kb on + strand, within RR42_RS11260 at 2407.930 kb on - strand, within RR42_RS11260 at 2407.930 kb on - strand, within RR42_RS11260 at 2407.930 kb on - strand, within RR42_RS11260 at 2408.022 kb on + strand at 2408.022 kb on + strand at 2408.023 kb on - strand at 2408.023 kb on - strand at 2408.067 kb on + strand at 2408.068 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,406,164 + RR42_RS11255 0.67 +1.0 2,406,164 + RR42_RS11255 0.67 -3.2 2,406,165 - RR42_RS11255 0.68 +1.2 2,406,165 - RR42_RS11255 0.68 +1.3 2,406,165 - RR42_RS11255 0.68 +0.2 2,406,165 - RR42_RS11255 0.68 +1.0 2,406,165 - RR42_RS11255 0.68 +1.2 2,406,237 - RR42_RS11255 0.71 +1.2 2,406,237 - RR42_RS11255 0.71 +1.1 2,406,321 - RR42_RS11255 0.75 +1.6 2,406,446 + RR42_RS11255 0.82 -0.8 2,406,447 - RR42_RS11255 0.82 -1.9 2,406,447 - RR42_RS11255 0.82 +0.3 2,406,452 + RR42_RS11255 0.82 +0.1 2,406,452 + RR42_RS11255 0.82 +0.7 2,406,453 - RR42_RS11255 0.82 +1.3 2,406,453 - RR42_RS11255 0.82 +2.3 2,406,453 - RR42_RS11255 0.82 +1.5 2,406,503 + RR42_RS11255 0.85 -4.0 2,406,629 + -0.1 2,406,713 + +0.5 2,406,895 + +1.1 2,407,148 + +2.1 2,407,148 + +0.9 2,407,305 + RR42_RS11260 0.16 -3.7 2,407,305 + RR42_RS11260 0.16 -3.6 2,407,305 + RR42_RS11260 0.16 +0.8 2,407,306 - RR42_RS11260 0.16 -2.2 2,407,306 - RR42_RS11260 0.16 -2.0 2,407,306 - RR42_RS11260 0.16 +0.5 2,407,881 + RR42_RS11260 0.79 -4.2 2,407,881 + RR42_RS11260 0.79 -3.3 2,407,929 + RR42_RS11260 0.84 -1.8 2,407,930 - RR42_RS11260 0.85 -1.6 2,407,930 - RR42_RS11260 0.85 -3.0 2,407,930 - RR42_RS11260 0.85 -2.3 2,408,022 + +1.9 2,408,022 + -1.4 2,408,023 - -2.0 2,408,023 - +0.9 2,408,067 + -0.0 2,408,068 - -3.9
Or see this region's nucleotide sequence