Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS11160 and RR42_RS11165 are separated by 137 nucleotides RR42_RS11165 and RR42_RS11170 are separated by 70 nucleotides RR42_RS11170 and RR42_RS11175 are separated by 84 nucleotides
RR42_RS11160: RR42_RS11160 - hypothetical protein, at 2,384,662 to 2,386,197
_RS11160
RR42_RS11165: RR42_RS11165 - methionine sulfoxide reductase B, at 2,386,335 to 2,386,781
_RS11165
RR42_RS11170: RR42_RS11170 - septation protein A, at 2,386,852 to 2,387,391
_RS11170
RR42_RS11175: RR42_RS11175 - BolA family transcriptional regulator, at 2,387,476 to 2,387,790
_RS11175
Position (kb)
2386
2387 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2385.426 kb on + strand, within RR42_RS11160 at 2385.426 kb on + strand, within RR42_RS11160 at 2385.427 kb on - strand, within RR42_RS11160 at 2385.526 kb on + strand, within RR42_RS11160 at 2385.527 kb on - strand, within RR42_RS11160 at 2385.532 kb on + strand, within RR42_RS11160 at 2385.532 kb on + strand, within RR42_RS11160 at 2385.533 kb on - strand, within RR42_RS11160 at 2385.533 kb on - strand, within RR42_RS11160 at 2385.533 kb on - strand, within RR42_RS11160 at 2385.533 kb on - strand, within RR42_RS11160 at 2385.826 kb on + strand, within RR42_RS11160 at 2385.827 kb on - strand, within RR42_RS11160 at 2386.015 kb on + strand, within RR42_RS11160 at 2386.015 kb on + strand, within RR42_RS11160 at 2386.015 kb on + strand, within RR42_RS11160 at 2386.141 kb on + strand at 2386.141 kb on + strand at 2386.223 kb on + strand at 2386.464 kb on + strand, within RR42_RS11165 at 2386.464 kb on + strand, within RR42_RS11165 at 2386.464 kb on + strand, within RR42_RS11165 at 2386.465 kb on - strand, within RR42_RS11165 at 2386.539 kb on + strand, within RR42_RS11165 at 2386.540 kb on - strand, within RR42_RS11165 at 2387.389 kb on + strand at 2387.603 kb on - strand, within RR42_RS11175 at 2387.668 kb on + strand, within RR42_RS11175 at 2387.668 kb on + strand, within RR42_RS11175 at 2387.668 kb on + strand, within RR42_RS11175 at 2387.668 kb on + strand, within RR42_RS11175 at 2387.669 kb on - strand, within RR42_RS11175
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,385,426 + RR42_RS11160 0.50 -2.6 2,385,426 + RR42_RS11160 0.50 +0.8 2,385,427 - RR42_RS11160 0.50 -0.5 2,385,526 + RR42_RS11160 0.56 +1.6 2,385,527 - RR42_RS11160 0.56 -2.3 2,385,532 + RR42_RS11160 0.57 +0.1 2,385,532 + RR42_RS11160 0.57 -2.3 2,385,533 - RR42_RS11160 0.57 -3.4 2,385,533 - RR42_RS11160 0.57 -2.2 2,385,533 - RR42_RS11160 0.57 +0.2 2,385,533 - RR42_RS11160 0.57 -0.2 2,385,826 + RR42_RS11160 0.76 -3.2 2,385,827 - RR42_RS11160 0.76 -2.8 2,386,015 + RR42_RS11160 0.88 +0.7 2,386,015 + RR42_RS11160 0.88 +0.5 2,386,015 + RR42_RS11160 0.88 +0.5 2,386,141 + -0.0 2,386,141 + +1.4 2,386,223 + +0.7 2,386,464 + RR42_RS11165 0.29 -0.8 2,386,464 + RR42_RS11165 0.29 +0.3 2,386,464 + RR42_RS11165 0.29 -4.1 2,386,465 - RR42_RS11165 0.29 -0.1 2,386,539 + RR42_RS11165 0.46 -0.5 2,386,540 - RR42_RS11165 0.46 +1.4 2,387,389 + +0.2 2,387,603 - RR42_RS11175 0.40 +1.3 2,387,668 + RR42_RS11175 0.61 -1.5 2,387,668 + RR42_RS11175 0.61 -0.0 2,387,668 + RR42_RS11175 0.61 +0.1 2,387,668 + RR42_RS11175 0.61 -0.9 2,387,669 - RR42_RS11175 0.61 -3.8
Or see this region's nucleotide sequence