Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS11165

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS11160 and RR42_RS11165 are separated by 137 nucleotidesRR42_RS11165 and RR42_RS11170 are separated by 70 nucleotidesRR42_RS11170 and RR42_RS11175 are separated by 84 nucleotides RR42_RS11160: RR42_RS11160 - hypothetical protein, at 2,384,662 to 2,386,197 _RS11160 RR42_RS11165: RR42_RS11165 - methionine sulfoxide reductase B, at 2,386,335 to 2,386,781 _RS11165 RR42_RS11170: RR42_RS11170 - septation protein A, at 2,386,852 to 2,387,391 _RS11170 RR42_RS11175: RR42_RS11175 - BolA family transcriptional regulator, at 2,387,476 to 2,387,790 _RS11175 Position (kb) 2386 2387Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2385.426 kb on + strand, within RR42_RS11160at 2385.426 kb on + strand, within RR42_RS11160at 2385.427 kb on - strand, within RR42_RS11160at 2385.526 kb on + strand, within RR42_RS11160at 2385.527 kb on - strand, within RR42_RS11160at 2385.532 kb on + strand, within RR42_RS11160at 2385.532 kb on + strand, within RR42_RS11160at 2385.533 kb on - strand, within RR42_RS11160at 2385.533 kb on - strand, within RR42_RS11160at 2385.533 kb on - strand, within RR42_RS11160at 2385.533 kb on - strand, within RR42_RS11160at 2385.826 kb on + strand, within RR42_RS11160at 2385.827 kb on - strand, within RR42_RS11160at 2386.015 kb on + strand, within RR42_RS11160at 2386.015 kb on + strand, within RR42_RS11160at 2386.015 kb on + strand, within RR42_RS11160at 2386.141 kb on + strandat 2386.141 kb on + strandat 2386.223 kb on + strandat 2386.464 kb on + strand, within RR42_RS11165at 2386.464 kb on + strand, within RR42_RS11165at 2386.464 kb on + strand, within RR42_RS11165at 2386.465 kb on - strand, within RR42_RS11165at 2386.539 kb on + strand, within RR42_RS11165at 2386.540 kb on - strand, within RR42_RS11165at 2387.389 kb on + strandat 2387.603 kb on - strand, within RR42_RS11175at 2387.668 kb on + strand, within RR42_RS11175at 2387.668 kb on + strand, within RR42_RS11175at 2387.668 kb on + strand, within RR42_RS11175at 2387.668 kb on + strand, within RR42_RS11175at 2387.669 kb on - strand, within RR42_RS11175

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
2,385,426 + RR42_RS11160 0.50 -2.6
2,385,426 + RR42_RS11160 0.50 +0.8
2,385,427 - RR42_RS11160 0.50 -0.5
2,385,526 + RR42_RS11160 0.56 +1.6
2,385,527 - RR42_RS11160 0.56 -2.3
2,385,532 + RR42_RS11160 0.57 +0.1
2,385,532 + RR42_RS11160 0.57 -2.3
2,385,533 - RR42_RS11160 0.57 -3.4
2,385,533 - RR42_RS11160 0.57 -2.2
2,385,533 - RR42_RS11160 0.57 +0.2
2,385,533 - RR42_RS11160 0.57 -0.2
2,385,826 + RR42_RS11160 0.76 -3.2
2,385,827 - RR42_RS11160 0.76 -2.8
2,386,015 + RR42_RS11160 0.88 +0.7
2,386,015 + RR42_RS11160 0.88 +0.5
2,386,015 + RR42_RS11160 0.88 +0.5
2,386,141 + -0.0
2,386,141 + +1.4
2,386,223 + +0.7
2,386,464 + RR42_RS11165 0.29 -0.8
2,386,464 + RR42_RS11165 0.29 +0.3
2,386,464 + RR42_RS11165 0.29 -4.1
2,386,465 - RR42_RS11165 0.29 -0.1
2,386,539 + RR42_RS11165 0.46 -0.5
2,386,540 - RR42_RS11165 0.46 +1.4
2,387,389 + +0.2
2,387,603 - RR42_RS11175 0.40 +1.3
2,387,668 + RR42_RS11175 0.61 -1.5
2,387,668 + RR42_RS11175 0.61 -0.0
2,387,668 + RR42_RS11175 0.61 +0.1
2,387,668 + RR42_RS11175 0.61 -0.9
2,387,669 - RR42_RS11175 0.61 -3.8

Or see this region's nucleotide sequence