Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS11060 and RR42_RS11065 are separated by 174 nucleotides RR42_RS11065 and RR42_RS11070 are separated by 90 nucleotides RR42_RS11070 and RR42_RS11075 are separated by 70 nucleotides
RR42_RS11060: RR42_RS11060 - 6-aminohexanoate hydrolase, at 2,359,842 to 2,361,161
_RS11060
RR42_RS11065: RR42_RS11065 - phenylacetic acid degradation protein, at 2,361,336 to 2,361,779
_RS11065
RR42_RS11070: RR42_RS11070 - gluconate 5-dehydrogenase, at 2,361,870 to 2,362,652
_RS11070
RR42_RS11075: RR42_RS11075 - acyl-CoA dehydrogenase, at 2,362,723 to 2,364,573
_RS11075
Position (kb)
2361
2362 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2360.392 kb on + strand, within RR42_RS11060 at 2360.392 kb on + strand, within RR42_RS11060 at 2360.393 kb on - strand, within RR42_RS11060 at 2360.446 kb on + strand, within RR42_RS11060 at 2360.506 kb on + strand, within RR42_RS11060 at 2360.506 kb on + strand, within RR42_RS11060 at 2360.506 kb on + strand, within RR42_RS11060 at 2360.537 kb on - strand, within RR42_RS11060 at 2360.548 kb on + strand, within RR42_RS11060 at 2360.549 kb on - strand, within RR42_RS11060 at 2360.729 kb on + strand, within RR42_RS11060 at 2360.730 kb on - strand, within RR42_RS11060 at 2360.801 kb on + strand, within RR42_RS11060 at 2360.804 kb on - strand, within RR42_RS11060 at 2361.157 kb on + strand at 2361.157 kb on + strand at 2361.157 kb on + strand at 2361.157 kb on + strand at 2361.157 kb on + strand at 2361.158 kb on - strand at 2361.158 kb on - strand at 2361.158 kb on - strand at 2361.262 kb on - strand at 2361.313 kb on + strand at 2361.482 kb on + strand, within RR42_RS11065 at 2361.482 kb on + strand, within RR42_RS11065 at 2361.482 kb on + strand, within RR42_RS11065 at 2361.787 kb on - strand at 2361.787 kb on - strand at 2361.804 kb on - strand at 2361.804 kb on - strand at 2361.871 kb on + strand at 2361.871 kb on + strand at 2361.871 kb on + strand at 2361.872 kb on - strand at 2361.872 kb on - strand at 2361.873 kb on + strand at 2362.156 kb on + strand, within RR42_RS11070 at 2362.156 kb on + strand, within RR42_RS11070 at 2362.156 kb on + strand, within RR42_RS11070 at 2362.157 kb on - strand, within RR42_RS11070 at 2362.157 kb on - strand, within RR42_RS11070 at 2362.744 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,360,392 + RR42_RS11060 0.42 +0.8 2,360,392 + RR42_RS11060 0.42 +1.0 2,360,393 - RR42_RS11060 0.42 -3.0 2,360,446 + RR42_RS11060 0.46 -2.5 2,360,506 + RR42_RS11060 0.50 -1.8 2,360,506 + RR42_RS11060 0.50 -3.7 2,360,506 + RR42_RS11060 0.50 -0.8 2,360,537 - RR42_RS11060 0.53 -0.7 2,360,548 + RR42_RS11060 0.53 -0.6 2,360,549 - RR42_RS11060 0.54 +0.1 2,360,729 + RR42_RS11060 0.67 +1.3 2,360,730 - RR42_RS11060 0.67 +2.0 2,360,801 + RR42_RS11060 0.73 -2.8 2,360,804 - RR42_RS11060 0.73 +0.8 2,361,157 + -3.9 2,361,157 + +0.8 2,361,157 + -1.0 2,361,157 + +1.4 2,361,157 + -1.9 2,361,158 - -1.4 2,361,158 - +1.0 2,361,158 - +1.8 2,361,262 - -0.4 2,361,313 + -2.4 2,361,482 + RR42_RS11065 0.33 +1.4 2,361,482 + RR42_RS11065 0.33 +0.6 2,361,482 + RR42_RS11065 0.33 +1.6 2,361,787 - -1.1 2,361,787 - -1.3 2,361,804 - -0.7 2,361,804 - -0.7 2,361,871 + +0.4 2,361,871 + +0.1 2,361,871 + +1.6 2,361,872 - -2.6 2,361,872 - -0.6 2,361,873 + +0.2 2,362,156 + RR42_RS11070 0.37 -2.0 2,362,156 + RR42_RS11070 0.37 +0.3 2,362,156 + RR42_RS11070 0.37 -2.7 2,362,157 - RR42_RS11070 0.37 +0.1 2,362,157 - RR42_RS11070 0.37 +1.3 2,362,744 - -0.2
Or see this region's nucleotide sequence