Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS09840 and RR42_RS09845 are separated by 161 nucleotides RR42_RS09845 and RR42_RS09850 overlap by 4 nucleotides RR42_RS09850 and RR42_RS09855 overlap by 49 nucleotides
RR42_RS09840: RR42_RS09840 - hypothetical protein, at 2,095,864 to 2,096,658
_RS09840
RR42_RS09845: RR42_RS09845 - hypothetical protein, at 2,096,820 to 2,097,110
_RS09845
RR42_RS09850: RR42_RS09850 - hypothetical protein, at 2,097,107 to 2,097,622
_RS09850
RR42_RS09855: RR42_RS09855 - hypothetical protein, at 2,097,574 to 2,097,891
_RS09855
Position (kb)
2097
2098 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2096.605 kb on - strand at 2096.638 kb on + strand at 2096.638 kb on + strand at 2096.678 kb on + strand at 2096.696 kb on - strand at 2096.822 kb on - strand at 2096.822 kb on - strand at 2097.215 kb on + strand, within RR42_RS09850 at 2097.215 kb on + strand, within RR42_RS09850 at 2097.216 kb on - strand, within RR42_RS09850 at 2097.216 kb on - strand, within RR42_RS09850 at 2097.575 kb on + strand at 2097.638 kb on + strand, within RR42_RS09855 at 2097.784 kb on + strand, within RR42_RS09855 at 2097.785 kb on - strand, within RR42_RS09855 at 2097.800 kb on + strand, within RR42_RS09855 at 2097.800 kb on + strand, within RR42_RS09855 at 2097.800 kb on + strand, within RR42_RS09855 at 2097.801 kb on - strand, within RR42_RS09855 at 2097.801 kb on - strand, within RR42_RS09855 at 2097.801 kb on - strand, within RR42_RS09855 at 2097.859 kb on - strand, within RR42_RS09855 at 2097.859 kb on - strand, within RR42_RS09855 at 2097.860 kb on + strand at 2097.998 kb on - strand at 2098.005 kb on + strand at 2098.036 kb on + strand at 2098.037 kb on - strand at 2098.170 kb on + strand at 2098.171 kb on - strand at 2098.233 kb on + strand at 2098.269 kb on + strand at 2098.269 kb on + strand at 2098.270 kb on - strand at 2098.270 kb on - strand at 2098.270 kb on - strand at 2098.270 kb on - strand at 2098.854 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,096,605 - +0.5 2,096,638 + +0.2 2,096,638 + -0.2 2,096,678 + -3.2 2,096,696 - -2.6 2,096,822 - -1.2 2,096,822 - +0.0 2,097,215 + RR42_RS09850 0.21 -0.9 2,097,215 + RR42_RS09850 0.21 -0.1 2,097,216 - RR42_RS09850 0.21 +1.9 2,097,216 - RR42_RS09850 0.21 +1.3 2,097,575 + -2.3 2,097,638 + RR42_RS09855 0.20 +0.5 2,097,784 + RR42_RS09855 0.66 +1.0 2,097,785 - RR42_RS09855 0.66 +0.2 2,097,800 + RR42_RS09855 0.71 +0.0 2,097,800 + RR42_RS09855 0.71 -1.2 2,097,800 + RR42_RS09855 0.71 -3.1 2,097,801 - RR42_RS09855 0.71 +0.5 2,097,801 - RR42_RS09855 0.71 -2.2 2,097,801 - RR42_RS09855 0.71 -3.5 2,097,859 - RR42_RS09855 0.90 -0.1 2,097,859 - RR42_RS09855 0.90 -2.8 2,097,860 + +0.2 2,097,998 - +0.9 2,098,005 + -0.0 2,098,036 + +0.2 2,098,037 - -1.3 2,098,170 + +2.1 2,098,171 - +1.8 2,098,233 + -0.7 2,098,269 + -2.8 2,098,269 + -0.1 2,098,270 - +1.7 2,098,270 - +1.0 2,098,270 - -0.8 2,098,270 - +0.4 2,098,854 - -0.3
Or see this region's nucleotide sequence