Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08930

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08920 and RR42_RS08925 are separated by 11 nucleotidesRR42_RS08925 and RR42_RS08930 overlap by 4 nucleotidesRR42_RS08930 and RR42_RS08935 are separated by 10 nucleotidesRR42_RS08935 and RR42_RS08940 are separated by 91 nucleotides RR42_RS08920: RR42_RS08920 - nitrate reductase, at 1,876,987 to 1,878,510 _RS08920 RR42_RS08925: RR42_RS08925 - nitrate reductase, at 1,878,522 to 1,879,202 _RS08925 RR42_RS08930: RR42_RS08930 - nitrate reductase, at 1,879,199 to 1,879,942 _RS08930 RR42_RS08935: RR42_RS08935 - peptidylprolyl isomerase, at 1,879,953 to 1,880,741 _RS08935 RR42_RS08940: RR42_RS08940 - hypothetical protein, at 1,880,833 to 1,881,183 _RS08940 Position (kb) 1879 1880Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1878.227 kb on - strand, within RR42_RS08920at 1878.313 kb on + strand, within RR42_RS08920at 1878.314 kb on - strand, within RR42_RS08920at 1878.337 kb on + strand, within RR42_RS08920at 1878.377 kb on - strandat 1878.377 kb on - strandat 1878.508 kb on + strandat 1878.508 kb on + strandat 1878.509 kb on - strandat 1878.702 kb on + strand, within RR42_RS08925at 1878.720 kb on + strand, within RR42_RS08925at 1878.721 kb on - strand, within RR42_RS08925at 1878.828 kb on + strand, within RR42_RS08925at 1878.829 kb on - strand, within RR42_RS08925at 1878.873 kb on + strand, within RR42_RS08925at 1878.873 kb on + strand, within RR42_RS08925at 1879.154 kb on + strandat 1879.155 kb on - strandat 1879.236 kb on - strandat 1879.236 kb on - strandat 1879.241 kb on + strandat 1879.241 kb on + strandat 1879.241 kb on + strandat 1879.242 kb on - strandat 1879.257 kb on + strandat 1879.257 kb on + strandat 1879.298 kb on + strand, within RR42_RS08930at 1879.345 kb on - strand, within RR42_RS08930at 1879.580 kb on - strand, within RR42_RS08930at 1879.632 kb on + strand, within RR42_RS08930at 1879.633 kb on - strand, within RR42_RS08930at 1879.774 kb on + strand, within RR42_RS08930at 1879.844 kb on + strand, within RR42_RS08930at 1879.845 kb on - strand, within RR42_RS08930at 1879.845 kb on - strand, within RR42_RS08930at 1879.860 kb on - strand, within RR42_RS08930at 1879.860 kb on - strand, within RR42_RS08930at 1880.242 kb on - strand, within RR42_RS08935at 1880.243 kb on + strand, within RR42_RS08935at 1880.244 kb on - strand, within RR42_RS08935at 1880.587 kb on + strand, within RR42_RS08935at 1880.587 kb on - strand, within RR42_RS08935at 1880.588 kb on - strand, within RR42_RS08935at 1880.643 kb on + strand, within RR42_RS08935at 1880.643 kb on + strand, within RR42_RS08935at 1880.643 kb on + strand, within RR42_RS08935at 1880.644 kb on - strand, within RR42_RS08935at 1880.644 kb on - strand, within RR42_RS08935at 1880.644 kb on - strand, within RR42_RS08935at 1880.665 kb on - strandat 1880.665 kb on - strandat 1880.734 kb on + strandat 1880.734 kb on + strandat 1880.734 kb on + strandat 1880.735 kb on - strandat 1880.735 kb on - strandat 1880.735 kb on - strandat 1880.739 kb on + strandat 1880.740 kb on - strandat 1880.802 kb on + strandat 1880.803 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,878,227 - RR42_RS08920 0.81 -1.0
1,878,313 + RR42_RS08920 0.87 +0.3
1,878,314 - RR42_RS08920 0.87 -0.5
1,878,337 + RR42_RS08920 0.89 +0.6
1,878,377 - -0.1
1,878,377 - -3.9
1,878,508 + +0.5
1,878,508 + +1.2
1,878,509 - +0.8
1,878,702 + RR42_RS08925 0.26 +0.7
1,878,720 + RR42_RS08925 0.29 -2.7
1,878,721 - RR42_RS08925 0.29 -3.3
1,878,828 + RR42_RS08925 0.45 +0.5
1,878,829 - RR42_RS08925 0.45 +3.3
1,878,873 + RR42_RS08925 0.52 +0.6
1,878,873 + RR42_RS08925 0.52 +1.0
1,879,154 + +0.3
1,879,155 - +0.1
1,879,236 - +0.1
1,879,236 - +0.4
1,879,241 + +2.2
1,879,241 + -1.1
1,879,241 + -2.3
1,879,242 - -3.1
1,879,257 + +1.0
1,879,257 + -3.6
1,879,298 + RR42_RS08930 0.13 +0.1
1,879,345 - RR42_RS08930 0.20 +0.1
1,879,580 - RR42_RS08930 0.51 -0.4
1,879,632 + RR42_RS08930 0.58 -2.6
1,879,633 - RR42_RS08930 0.58 +0.6
1,879,774 + RR42_RS08930 0.77 +0.5
1,879,844 + RR42_RS08930 0.87 -0.8
1,879,845 - RR42_RS08930 0.87 -2.6
1,879,845 - RR42_RS08930 0.87 -2.9
1,879,860 - RR42_RS08930 0.89 -0.5
1,879,860 - RR42_RS08930 0.89 -1.7
1,880,242 - RR42_RS08935 0.37 -0.1
1,880,243 + RR42_RS08935 0.37 +1.8
1,880,244 - RR42_RS08935 0.37 -0.5
1,880,587 + RR42_RS08935 0.80 -0.2
1,880,587 - RR42_RS08935 0.80 +0.7
1,880,588 - RR42_RS08935 0.80 -1.4
1,880,643 + RR42_RS08935 0.87 +0.7
1,880,643 + RR42_RS08935 0.87 +1.5
1,880,643 + RR42_RS08935 0.87 -1.5
1,880,644 - RR42_RS08935 0.88 -3.1
1,880,644 - RR42_RS08935 0.88 +1.1
1,880,644 - RR42_RS08935 0.88 +2.3
1,880,665 - -1.0
1,880,665 - -2.6
1,880,734 + +2.4
1,880,734 + -0.3
1,880,734 + -0.4
1,880,735 - +0.9
1,880,735 - +0.9
1,880,735 - -0.1
1,880,739 + -3.2
1,880,740 - +2.4
1,880,802 + +1.1
1,880,803 - -2.5

Or see this region's nucleotide sequence