Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS08755 and RR42_RS08760 are separated by 29 nucleotides RR42_RS08760 and RR42_RS08765 are separated by 55 nucleotides RR42_RS08765 and RR42_RS08770 are separated by 312 nucleotides
RR42_RS08755: RR42_RS08755 - molybdenum cofactor biosynthesis protein MoeA, at 1,834,084 to 1,835,208
_RS08755
RR42_RS08760: RR42_RS08760 - XRE family transcriptional regulator, at 1,835,238 to 1,835,903
_RS08760
RR42_RS08765: RR42_RS08765 - histidine kinase, at 1,835,959 to 1,837,890
_RS08765
RR42_RS08770: RR42_RS08770 - 2-nitropropane dioxygenase, at 1,838,203 to 1,839,384
_RS08770
Position (kb) 1835
1836
1837
1838 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1835.273 kb on - strand at 1835.600 kb on - strand, within RR42_RS08760 at 1836.551 kb on - strand, within RR42_RS08765 at 1836.841 kb on + strand, within RR42_RS08765 at 1837.154 kb on + strand, within RR42_RS08765 at 1837.155 kb on - strand, within RR42_RS08765 at 1837.155 kb on - strand, within RR42_RS08765 at 1837.157 kb on - strand, within RR42_RS08765 at 1837.310 kb on + strand, within RR42_RS08765 at 1837.311 kb on - strand, within RR42_RS08765 at 1837.311 kb on - strand, within RR42_RS08765 at 1837.311 kb on - strand, within RR42_RS08765 at 1837.981 kb on + strand at 1837.981 kb on + strand at 1837.981 kb on + strand at 1837.982 kb on - strand at 1837.986 kb on + strand at 1837.987 kb on - strand at 1838.133 kb on + strand at 1838.133 kb on + strand at 1838.508 kb on - strand, within RR42_RS08770
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,835,273 - -3.5 1,835,600 - RR42_RS08760 0.54 -2.3 1,836,551 - RR42_RS08765 0.31 -1.6 1,836,841 + RR42_RS08765 0.46 -2.8 1,837,154 + RR42_RS08765 0.62 +0.6 1,837,155 - RR42_RS08765 0.62 +1.7 1,837,155 - RR42_RS08765 0.62 -1.2 1,837,157 - RR42_RS08765 0.62 +0.9 1,837,310 + RR42_RS08765 0.70 -1.9 1,837,311 - RR42_RS08765 0.70 -2.9 1,837,311 - RR42_RS08765 0.70 +1.2 1,837,311 - RR42_RS08765 0.70 -2.3 1,837,981 + +2.6 1,837,981 + -3.0 1,837,981 + -0.9 1,837,982 - -2.3 1,837,986 + -0.6 1,837,987 - -3.0 1,838,133 + -4.2 1,838,133 + +1.1 1,838,508 - RR42_RS08770 0.26 -0.5
Or see this region's nucleotide sequence