Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08710

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS08700 and RR42_RS08705 are separated by 140 nucleotidesRR42_RS08705 and RR42_RS08710 are separated by 82 nucleotidesRR42_RS08710 and RR42_RS08715 are separated by 141 nucleotides RR42_RS08700: RR42_RS08700 - hypothetical protein, at 1,821,945 to 1,822,304 _RS08700 RR42_RS08705: RR42_RS08705 - pirin, at 1,822,445 to 1,823,152 _RS08705 RR42_RS08710: RR42_RS08710 - oxidoreductase, at 1,823,235 to 1,823,999 _RS08710 RR42_RS08715: RR42_RS08715 - LysR family transcriptional regulator, at 1,824,141 to 1,825,058 _RS08715 Position (kb) 1823 1824Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1822.278 kb on + strandat 1822.346 kb on - strandat 1822.363 kb on + strandat 1822.364 kb on - strandat 1822.364 kb on - strandat 1822.364 kb on - strandat 1822.463 kb on + strandat 1822.463 kb on + strandat 1822.498 kb on + strandat 1822.499 kb on - strandat 1822.757 kb on - strand, within RR42_RS08705at 1822.757 kb on - strand, within RR42_RS08705at 1822.929 kb on + strand, within RR42_RS08705at 1822.930 kb on - strand, within RR42_RS08705at 1823.031 kb on + strand, within RR42_RS08705at 1823.031 kb on + strand, within RR42_RS08705at 1823.031 kb on + strand, within RR42_RS08705at 1823.031 kb on + strand, within RR42_RS08705at 1823.032 kb on - strand, within RR42_RS08705at 1823.134 kb on - strandat 1823.375 kb on - strand, within RR42_RS08710at 1823.459 kb on + strand, within RR42_RS08710at 1823.505 kb on + strand, within RR42_RS08710at 1823.640 kb on + strand, within RR42_RS08710at 1823.641 kb on - strand, within RR42_RS08710at 1823.677 kb on + strand, within RR42_RS08710at 1823.777 kb on - strand, within RR42_RS08710at 1823.817 kb on + strand, within RR42_RS08710at 1823.868 kb on + strand, within RR42_RS08710at 1823.868 kb on + strand, within RR42_RS08710at 1823.869 kb on - strand, within RR42_RS08710at 1823.869 kb on - strand, within RR42_RS08710at 1823.896 kb on + strand, within RR42_RS08710at 1823.896 kb on + strand, within RR42_RS08710at 1823.952 kb on - strandat 1824.021 kb on + strandat 1824.022 kb on - strandat 1824.068 kb on + strandat 1824.173 kb on + strandat 1824.173 kb on + strandat 1824.173 kb on + strandat 1824.173 kb on + strandat 1824.174 kb on - strandat 1824.174 kb on - strandat 1824.366 kb on + strand, within RR42_RS08715at 1824.367 kb on - strand, within RR42_RS08715at 1824.954 kb on + strand, within RR42_RS08715at 1824.954 kb on + strand, within RR42_RS08715at 1824.955 kb on + strand, within RR42_RS08715

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
1,822,278 + +2.3
1,822,346 - -3.0
1,822,363 + +1.7
1,822,364 - -0.5
1,822,364 - +1.0
1,822,364 - -0.3
1,822,463 + +1.9
1,822,463 + -0.4
1,822,498 + -1.3
1,822,499 - +2.1
1,822,757 - RR42_RS08705 0.44 +0.1
1,822,757 - RR42_RS08705 0.44 +1.5
1,822,929 + RR42_RS08705 0.68 -2.3
1,822,930 - RR42_RS08705 0.69 +1.5
1,823,031 + RR42_RS08705 0.83 +1.3
1,823,031 + RR42_RS08705 0.83 +1.0
1,823,031 + RR42_RS08705 0.83 -0.9
1,823,031 + RR42_RS08705 0.83 -3.0
1,823,032 - RR42_RS08705 0.83 +1.5
1,823,134 - -0.1
1,823,375 - RR42_RS08710 0.18 -3.7
1,823,459 + RR42_RS08710 0.29 -2.4
1,823,505 + RR42_RS08710 0.35 -2.9
1,823,640 + RR42_RS08710 0.53 +0.2
1,823,641 - RR42_RS08710 0.53 -0.8
1,823,677 + RR42_RS08710 0.58 -4.0
1,823,777 - RR42_RS08710 0.71 +1.2
1,823,817 + RR42_RS08710 0.76 -3.1
1,823,868 + RR42_RS08710 0.83 +0.4
1,823,868 + RR42_RS08710 0.83 -3.7
1,823,869 - RR42_RS08710 0.83 +0.4
1,823,869 - RR42_RS08710 0.83 -0.2
1,823,896 + RR42_RS08710 0.86 +0.2
1,823,896 + RR42_RS08710 0.86 +1.7
1,823,952 - +1.2
1,824,021 + +1.5
1,824,022 - +1.3
1,824,068 + +1.7
1,824,173 + +0.7
1,824,173 + +3.0
1,824,173 + +2.1
1,824,173 + +2.5
1,824,174 - -2.3
1,824,174 - -2.0
1,824,366 + RR42_RS08715 0.25 +1.8
1,824,367 - RR42_RS08715 0.25 +0.8
1,824,954 + RR42_RS08715 0.89 -2.6
1,824,954 + RR42_RS08715 0.89 -1.5
1,824,955 + RR42_RS08715 0.89 -1.5

Or see this region's nucleotide sequence