Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07930 and RR42_RS07935 are separated by 34 nucleotides RR42_RS07935 and RR42_RS07940 are separated by 4 nucleotides RR42_RS07940 and RR42_RS07945 are separated by 27 nucleotides
RR42_RS07930: RR42_RS07930 - peptide ABC transporter ATP-binding protein, at 1,703,883 to 1,704,935
_RS07930
RR42_RS07935: RR42_RS07935 - peptide ABC transporter ATPase, at 1,704,970 to 1,706,055
_RS07935
RR42_RS07940: RR42_RS07940 - ABC transporter permease, at 1,706,060 to 1,706,947
_RS07940
RR42_RS07945: RR42_RS07945 - ABC transporter permease, at 1,706,975 to 1,707,925
_RS07945
Position (kb) 1704
1705
1706
1707 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1704.125 kb on + strand, within RR42_RS07930 at 1704.126 kb on - strand, within RR42_RS07930 at 1704.126 kb on - strand, within RR42_RS07930 at 1704.128 kb on - strand, within RR42_RS07930 at 1704.191 kb on - strand, within RR42_RS07930 at 1704.556 kb on + strand, within RR42_RS07930 at 1704.556 kb on + strand, within RR42_RS07930 at 1704.600 kb on + strand, within RR42_RS07930 at 1704.915 kb on + strand at 1704.915 kb on + strand at 1704.940 kb on - strand at 1704.940 kb on - strand at 1705.269 kb on - strand, within RR42_RS07935 at 1705.310 kb on + strand, within RR42_RS07935 at 1705.311 kb on - strand, within RR42_RS07935 at 1705.311 kb on - strand, within RR42_RS07935 at 1705.373 kb on + strand, within RR42_RS07935 at 1705.373 kb on + strand, within RR42_RS07935 at 1705.377 kb on + strand, within RR42_RS07935 at 1705.691 kb on + strand, within RR42_RS07935 at 1705.692 kb on - strand, within RR42_RS07935 at 1706.532 kb on + strand, within RR42_RS07940 at 1706.563 kb on + strand, within RR42_RS07940 at 1706.584 kb on - strand, within RR42_RS07940 at 1706.721 kb on + strand, within RR42_RS07940 at 1706.722 kb on - strand, within RR42_RS07940
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,704,125 + RR42_RS07930 0.23 +1.7 1,704,126 - RR42_RS07930 0.23 -3.1 1,704,126 - RR42_RS07930 0.23 +1.4 1,704,128 - RR42_RS07930 0.23 +1.0 1,704,191 - RR42_RS07930 0.29 +2.4 1,704,556 + RR42_RS07930 0.64 +0.4 1,704,556 + RR42_RS07930 0.64 -2.0 1,704,600 + RR42_RS07930 0.68 -2.3 1,704,915 + +0.1 1,704,915 + +0.5 1,704,940 - -0.4 1,704,940 - -0.6 1,705,269 - RR42_RS07935 0.28 -0.9 1,705,310 + RR42_RS07935 0.31 +0.4 1,705,311 - RR42_RS07935 0.31 -3.1 1,705,311 - RR42_RS07935 0.31 -1.5 1,705,373 + RR42_RS07935 0.37 -3.9 1,705,373 + RR42_RS07935 0.37 +0.5 1,705,377 + RR42_RS07935 0.37 +0.4 1,705,691 + RR42_RS07935 0.66 +1.1 1,705,692 - RR42_RS07935 0.66 -2.9 1,706,532 + RR42_RS07940 0.53 -1.0 1,706,563 + RR42_RS07940 0.57 +1.6 1,706,584 - RR42_RS07940 0.59 -1.6 1,706,721 + RR42_RS07940 0.74 -0.9 1,706,722 - RR42_RS07940 0.75 +1.7
Or see this region's nucleotide sequence