Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07920

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07915 and RR42_RS07920 are separated by 52 nucleotidesRR42_RS07920 and RR42_RS07925 are separated by 32 nucleotides RR42_RS07915: RR42_RS07915 - multidrug transporter AcrB, at 1,698,973 to 1,702,086 _RS07915 RR42_RS07920: RR42_RS07920 - cyclophilin-like superfamily protein, at 1,702,139 to 1,702,549 _RS07920 RR42_RS07925: RR42_RS07925 - amidase, at 1,702,582 to 1,703,772 _RS07925 Position (kb) 1702 1703Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 1702.027 kb on + strandat 1702.027 kb on + strandat 1702.028 kb on - strandat 1702.311 kb on + strand, within RR42_RS07920at 1702.324 kb on - strand, within RR42_RS07920at 1702.757 kb on + strand, within RR42_RS07925at 1702.757 kb on + strand, within RR42_RS07925at 1702.758 kb on - strand, within RR42_RS07925at 1703.015 kb on + strand, within RR42_RS07925at 1703.016 kb on - strand, within RR42_RS07925at 1703.016 kb on - strand, within RR42_RS07925at 1703.265 kb on + strand, within RR42_RS07925at 1703.266 kb on - strand, within RR42_RS07925at 1703.486 kb on + strand, within RR42_RS07925at 1703.486 kb on + strand, within RR42_RS07925

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,702,027 + +0.3
1,702,027 + -2.9
1,702,028 - -0.4
1,702,311 + RR42_RS07920 0.42 -1.0
1,702,324 - RR42_RS07920 0.45 +0.9
1,702,757 + RR42_RS07925 0.15 -3.6
1,702,757 + RR42_RS07925 0.15 -0.2
1,702,758 - RR42_RS07925 0.15 +0.7
1,703,015 + RR42_RS07925 0.36 -2.0
1,703,016 - RR42_RS07925 0.36 +0.6
1,703,016 - RR42_RS07925 0.36 -2.2
1,703,265 + RR42_RS07925 0.57 -0.8
1,703,266 - RR42_RS07925 0.57 +1.0
1,703,486 + RR42_RS07925 0.76 -3.0
1,703,486 + RR42_RS07925 0.76 +6.6

Or see this region's nucleotide sequence