Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07480

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,597,786	+		RR42_RS07470	0.84	-0.2
1,597,786	+		RR42_RS07470	0.84	-0.3
1,597,787	-		RR42_RS07470	0.84	+1.0
1,597,787	-		RR42_RS07470	0.84	+2.4
1,597,852	+				-1.1
1,597,852	+				-0.4
1,597,853	-				+1.0
1,597,864	+				+2.2
1,597,865	-				-1.8
1,597,879	+				-1.6
1,597,879	+				-3.6
1,597,879	+				+1.4
1,597,880	-				+0.7
1,597,880	-				+1.1
1,597,911	+				-0.9
1,598,176	+		RR42_RS07475	0.22	+3.0
1,598,177	-		RR42_RS07475	0.22	+0.9
1,598,177	-		RR42_RS07475	0.22	-2.2
1,598,177	-		RR42_RS07475	0.22	+0.8
1,598,177	-		RR42_RS07475	0.22	-1.6
1,598,270	+		RR42_RS07475	0.35	+0.2
1,598,271	-		RR42_RS07475	0.35	+1.4
1,598,271	-		RR42_RS07475	0.35	-2.9
1,598,271	-		RR42_RS07475	0.35	+0.2
1,598,298	-		RR42_RS07475	0.38	-0.0
1,598,581	+		RR42_RS07475	0.77	-0.8
1,598,581	+		RR42_RS07475	0.77	+0.5
1,598,581	+		RR42_RS07475	0.77	-0.9
1,598,581	+		RR42_RS07475	0.77	+0.3
1,598,582	-		RR42_RS07475	0.77	-3.7
1,598,582	-		RR42_RS07475	0.77	+1.3
1,598,582	-		RR42_RS07475	0.77	+0.1
1,598,582	-		RR42_RS07475	0.77	-2.1
1,598,628	-		RR42_RS07475	0.83	-1.4
1,598,946	-		RR42_RS07480	0.28	-4.1
1,598,946	-		RR42_RS07480	0.28	-0.1
1,598,969	+		RR42_RS07480	0.32	-1.4
1,598,969	+		RR42_RS07480	0.32	-2.7
1,598,969	+		RR42_RS07480	0.32	-1.0
1,599,024	+		RR42_RS07480	0.41	-3.3
1,599,025	-		RR42_RS07480	0.41	-3.7
1,599,025	-		RR42_RS07480	0.41	-1.7
1,599,025	-		RR42_RS07480	0.41	-4.4
1,599,025	-		RR42_RS07480	0.41	-1.5
1,599,025	-		RR42_RS07480	0.41	-2.8
1,599,136	+		RR42_RS07480	0.60	-1.7
1,599,137	-		RR42_RS07480	0.61	-1.4
1,599,267	+		RR42_RS07480	0.83	-3.5
1,599,267	+		RR42_RS07480	0.83	-2.4
1,599,267	+		RR42_RS07480	0.83	-2.2
1,599,398	+				-3.7
1,599,398	+				+1.1
1,599,398	+				-2.4
1,599,399	-				-1.9
1,599,399	-				+0.3
1,599,507	-				+1.7
1,599,550	+				-3.4
1,599,656	+				+0.4
1,599,657	-				-0.4
1,599,975	+		RR42_RS07490	0.33	-3.4
1,599,975	+		RR42_RS07490	0.33	+0.3
1,599,976	-		RR42_RS07490	0.33	-1.4
1,600,035	+		RR42_RS07490	0.42	-0.5
1,600,035	+		RR42_RS07490	0.42	-1.8
1,600,035	+		RR42_RS07490	0.42	+1.5
1,600,036	-		RR42_RS07490	0.42	+0.3
1,600,036	-		RR42_RS07490	0.42	+0.2
1,600,036	-		RR42_RS07490	0.42	-1.3
1,600,192	-		RR42_RS07490	0.66	-0.1
1,600,219	+		RR42_RS07490	0.70	-0.2
1,600,219	+		RR42_RS07490	0.70	-2.6
1,600,233	+		RR42_RS07490	0.73	+0.0
1,600,233	+		RR42_RS07490	0.73	+3.1
1,600,233	+		RR42_RS07490	0.73	-0.4
1,600,233	+		RR42_RS07490	0.73	+1.3
1,600,234	-		RR42_RS07490	0.73	-2.7
1,600,234	-		RR42_RS07490	0.73	+0.9
1,600,234	-		RR42_RS07490	0.73	-1.8
1,600,291	-				+0.3
1,600,315	-		RR42_RS07490	0.85	+0.3
1,600,315	-		RR42_RS07490	0.85	-1.4
1,600,315	-		RR42_RS07490	0.85	+2.3