Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS06175 and RR42_RS06180 are separated by 83 nucleotides RR42_RS06180 and RR42_RS06185 are separated by 123 nucleotides RR42_RS06185 and RR42_RS06190 are separated by 126 nucleotides
RR42_RS06175: RR42_RS06175 - enolase, at 1,356,578 to 1,357,867
_RS06175
RR42_RS06180: RR42_RS06180 - cell division protein FtsB, at 1,357,951 to 1,358,289
_RS06180
RR42_RS06185: RR42_RS06185 - hypothetical protein, at 1,358,413 to 1,358,814
_RS06185
RR42_RS06190: RR42_RS06190 - molecular chaperone Hsp33, at 1,358,941 to 1,359,969
_RS06190
Position (kb)
1358
1359 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1357.853 kb on + strand at 1357.854 kb on - strand at 1358.287 kb on + strand at 1358.287 kb on + strand at 1358.405 kb on - strand at 1358.414 kb on + strand at 1358.414 kb on + strand at 1358.414 kb on + strand at 1358.424 kb on - strand at 1358.514 kb on - strand, within RR42_RS06185 at 1358.526 kb on + strand, within RR42_RS06185 at 1358.527 kb on - strand, within RR42_RS06185 at 1358.543 kb on + strand, within RR42_RS06185 at 1358.543 kb on + strand, within RR42_RS06185 at 1358.543 kb on + strand, within RR42_RS06185 at 1358.543 kb on + strand, within RR42_RS06185 at 1358.543 kb on + strand, within RR42_RS06185 at 1358.544 kb on - strand, within RR42_RS06185 at 1358.544 kb on - strand, within RR42_RS06185 at 1358.544 kb on - strand, within RR42_RS06185 at 1358.544 kb on - strand, within RR42_RS06185 at 1358.544 kb on - strand, within RR42_RS06185 at 1358.544 kb on - strand, within RR42_RS06185 at 1358.546 kb on + strand, within RR42_RS06185 at 1358.546 kb on + strand, within RR42_RS06185 at 1358.546 kb on + strand, within RR42_RS06185 at 1358.547 kb on - strand, within RR42_RS06185 at 1358.547 kb on - strand, within RR42_RS06185 at 1358.547 kb on - strand, within RR42_RS06185 at 1358.547 kb on - strand, within RR42_RS06185 at 1358.547 kb on - strand, within RR42_RS06185 at 1358.547 kb on - strand, within RR42_RS06185 at 1358.547 kb on - strand, within RR42_RS06185 at 1358.614 kb on + strand, within RR42_RS06185 at 1358.615 kb on - strand, within RR42_RS06185 at 1359.029 kb on + strand at 1359.226 kb on + strand, within RR42_RS06190 at 1359.226 kb on + strand, within RR42_RS06190 at 1359.489 kb on + strand, within RR42_RS06190 at 1359.489 kb on + strand, within RR42_RS06190 at 1359.489 kb on + strand, within RR42_RS06190 at 1359.489 kb on + strand, within RR42_RS06190 at 1359.490 kb on - strand, within RR42_RS06190 at 1359.490 kb on - strand, within RR42_RS06190 at 1359.490 kb on - strand, within RR42_RS06190 at 1359.490 kb on - strand, within RR42_RS06190 at 1359.490 kb on - strand, within RR42_RS06190 at 1359.491 kb on + strand, within RR42_RS06190 at 1359.491 kb on + strand, within RR42_RS06190 at 1359.491 kb on + strand, within RR42_RS06190 at 1359.491 kb on + strand, within RR42_RS06190 at 1359.491 kb on + strand, within RR42_RS06190 at 1359.492 kb on - strand, within RR42_RS06190 at 1359.492 kb on - strand, within RR42_RS06190 at 1359.492 kb on - strand, within RR42_RS06190 at 1359.492 kb on - strand, within RR42_RS06190 at 1359.492 kb on - strand, within RR42_RS06190 at 1359.492 kb on - strand, within RR42_RS06190
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,357,853 + -0.8 1,357,854 - -2.4 1,358,287 + +0.7 1,358,287 + +0.0 1,358,405 - +1.5 1,358,414 + +0.1 1,358,414 + -0.2 1,358,414 + -0.9 1,358,424 - +1.1 1,358,514 - RR42_RS06185 0.25 +1.5 1,358,526 + RR42_RS06185 0.28 +0.5 1,358,527 - RR42_RS06185 0.28 -0.4 1,358,543 + RR42_RS06185 0.32 -0.2 1,358,543 + RR42_RS06185 0.32 -0.4 1,358,543 + RR42_RS06185 0.32 +0.6 1,358,543 + RR42_RS06185 0.32 -0.7 1,358,543 + RR42_RS06185 0.32 +0.2 1,358,544 - RR42_RS06185 0.33 +1.1 1,358,544 - RR42_RS06185 0.33 -0.6 1,358,544 - RR42_RS06185 0.33 +0.1 1,358,544 - RR42_RS06185 0.33 +1.0 1,358,544 - RR42_RS06185 0.33 +0.1 1,358,544 - RR42_RS06185 0.33 -4.0 1,358,546 + RR42_RS06185 0.33 +1.0 1,358,546 + RR42_RS06185 0.33 -2.3 1,358,546 + RR42_RS06185 0.33 +1.7 1,358,547 - RR42_RS06185 0.33 +1.7 1,358,547 - RR42_RS06185 0.33 +0.7 1,358,547 - RR42_RS06185 0.33 -3.7 1,358,547 - RR42_RS06185 0.33 -1.6 1,358,547 - RR42_RS06185 0.33 +1.1 1,358,547 - RR42_RS06185 0.33 +1.3 1,358,547 - RR42_RS06185 0.33 +0.7 1,358,614 + RR42_RS06185 0.50 +1.0 1,358,615 - RR42_RS06185 0.50 +0.2 1,359,029 + -3.5 1,359,226 + RR42_RS06190 0.28 -0.6 1,359,226 + RR42_RS06190 0.28 +0.4 1,359,489 + RR42_RS06190 0.53 -3.0 1,359,489 + RR42_RS06190 0.53 +2.8 1,359,489 + RR42_RS06190 0.53 +0.9 1,359,489 + RR42_RS06190 0.53 +1.5 1,359,490 - RR42_RS06190 0.53 +0.1 1,359,490 - RR42_RS06190 0.53 +0.4 1,359,490 - RR42_RS06190 0.53 -0.1 1,359,490 - RR42_RS06190 0.53 -1.3 1,359,490 - RR42_RS06190 0.53 -1.5 1,359,491 + RR42_RS06190 0.53 -0.0 1,359,491 + RR42_RS06190 0.53 +1.0 1,359,491 + RR42_RS06190 0.53 +0.6 1,359,491 + RR42_RS06190 0.53 +3.3 1,359,491 + RR42_RS06190 0.53 +1.5 1,359,492 - RR42_RS06190 0.54 +0.4 1,359,492 - RR42_RS06190 0.54 +0.8 1,359,492 - RR42_RS06190 0.54 +0.1 1,359,492 - RR42_RS06190 0.54 +1.6 1,359,492 - RR42_RS06190 0.54 -0.6 1,359,492 - RR42_RS06190 0.54 -1.2
Or see this region's nucleotide sequence