Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05390

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,190,705	+		RR42_RS05380	0.63	+0.1
1,191,253	+		RR42_RS05385	0.29	+0.9
1,191,254	-		RR42_RS05385	0.29	+0.9
1,191,296	-		RR42_RS05385	0.36	+0.5
1,191,557	-		RR42_RS05385	0.81	+0.5
1,191,649	+				-0.0
1,191,649	+				-0.1
1,191,650	-				+1.8
1,191,650	-				-0.4
1,191,778	+		RR42_RS05390	0.16	-0.2
1,191,778	+		RR42_RS05390	0.16	+0.9
1,191,778	+		RR42_RS05390	0.16	+1.1
1,191,778	+		RR42_RS05390	0.16	+0.2
1,191,778	+		RR42_RS05390	0.16	+0.2
1,191,779	-		RR42_RS05390	0.16	+1.3
1,191,779	-		RR42_RS05390	0.16	-3.7
1,191,783	+		RR42_RS05390	0.17	-1.2
1,191,784	-		RR42_RS05390	0.17	-2.0
1,191,784	-		RR42_RS05390	0.17	-1.5
1,191,829	-		RR42_RS05390	0.23	-1.7
1,191,829	-		RR42_RS05390	0.23	+0.8
1,191,867	+		RR42_RS05390	0.29	-1.2
1,191,867	+		RR42_RS05390	0.29	+0.3
1,191,867	+		RR42_RS05390	0.29	-0.3
1,191,867	+		RR42_RS05390	0.29	+1.4
1,191,867	+		RR42_RS05390	0.29	+0.1
1,191,867	+		RR42_RS05390	0.29	+1.3
1,191,868	-		RR42_RS05390	0.29	+0.8
1,191,868	-		RR42_RS05390	0.29	-2.4
1,191,886	+		RR42_RS05390	0.32	+1.9
1,191,886	+		RR42_RS05390	0.32	+1.3
1,191,887	-		RR42_RS05390	0.32	-1.8
1,192,086	+		RR42_RS05390	0.60	-0.3
1,192,086	+		RR42_RS05390	0.60	+0.5
1,192,086	+		RR42_RS05390	0.60	-1.4
1,192,086	+		RR42_RS05390	0.60	+0.6
1,192,087	-		RR42_RS05390	0.60	-2.6
1,192,087	-		RR42_RS05390	0.60	+1.1
1,192,087	-		RR42_RS05390	0.60	-2.9
1,192,087	-		RR42_RS05390	0.60	+1.3
1,192,087	-		RR42_RS05390	0.60	-3.9
1,192,087	-		RR42_RS05390	0.60	+0.0
1,192,087	-		RR42_RS05390	0.60	+2.1
1,192,087	-		RR42_RS05390	0.60	+0.1
1,192,087	-		RR42_RS05390	0.60	-3.1
1,192,087	-		RR42_RS05390	0.60	+0.1
1,192,096	-		RR42_RS05390	0.62	+0.7
1,192,215	+		RR42_RS05390	0.79	+1.9
1,192,218	+		RR42_RS05390	0.79	-3.6
1,192,406	-				+0.3
1,192,407	+				+0.1
1,192,408	-				-0.8
1,192,572	+		RR42_RS05395	0.17	-1.9
1,192,912	+				+1.1
1,192,913	-				+1.9
1,192,913	-				+0.7
1,192,913	-				-3.0
1,193,311	-		RR42_RS05400	0.35	+0.5
1,193,351	+		RR42_RS05400	0.38	-3.2
1,193,351	+		RR42_RS05400	0.38	-2.2
1,193,351	+		RR42_RS05400	0.38	+1.9
1,193,351	+		RR42_RS05400	0.38	-0.8
1,193,352	-		RR42_RS05400	0.38	-1.9