Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05355

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,184,178	+				+2.2
1,184,178	+				-0.5
1,184,179	-				-0.2
1,184,179	-				+1.1
1,184,212	+		RR42_RS05350	0.10	-0.9
1,184,213	-		RR42_RS05350	0.10	+2.1
1,184,213	-		RR42_RS05350	0.10	+0.9
1,184,213	-		RR42_RS05350	0.10	+0.9
1,184,244	+		RR42_RS05350	0.14	+2.7
1,184,245	-				+0.9
1,184,245	-		RR42_RS05350	0.14	+1.7
1,184,245	-		RR42_RS05350	0.14	+2.3
1,184,290	-		RR42_RS05350	0.19	+0.9
1,184,290	-		RR42_RS05350	0.19	+0.8
1,184,290	-		RR42_RS05350	0.19	-0.5
1,184,358	+		RR42_RS05350	0.28	-2.6
1,184,358	+		RR42_RS05350	0.28	+1.7
1,184,358	+		RR42_RS05350	0.28	-0.2
1,184,359	-		RR42_RS05350	0.28	-0.2
1,184,359	-		RR42_RS05350	0.28	+1.4
1,184,380	+		RR42_RS05350	0.30	+1.1
1,184,380	+		RR42_RS05350	0.30	+0.9
1,184,380	+		RR42_RS05350	0.30	-2.0
1,184,380	+		RR42_RS05350	0.30	+1.1
1,184,381	-		RR42_RS05350	0.30	+1.5
1,184,381	-		RR42_RS05350	0.30	+2.0
1,184,381	-		RR42_RS05350	0.30	+2.8
1,184,381	-		RR42_RS05350	0.30	+1.0
1,184,381	-		RR42_RS05350	0.30	+1.8
1,184,381	-		RR42_RS05350	0.30	-0.5
1,184,381	-		RR42_RS05350	0.30	-1.8
1,184,443	-		RR42_RS05350	0.38	-0.5
1,184,637	+		RR42_RS05350	0.61	+1.2
1,184,637	+		RR42_RS05350	0.61	-0.7
1,184,637	+		RR42_RS05350	0.61	+0.2
1,184,637	+		RR42_RS05350	0.61	+0.3
1,184,637	+		RR42_RS05350	0.61	+1.8
1,184,637	+		RR42_RS05350	0.61	+0.9
1,184,638	-		RR42_RS05350	0.61	+3.6
1,184,638	-		RR42_RS05350	0.61	+2.9
1,184,638	-		RR42_RS05350	0.61	-0.6
1,184,638	-		RR42_RS05350	0.61	-1.1
1,184,638	-		RR42_RS05350	0.61	+1.3
1,184,638	-		RR42_RS05350	0.61	-1.4
1,184,956	+				+1.3
1,184,957	-				-0.6
1,185,642	+		RR42_RS05355	0.46	-3.0
1,185,643	-		RR42_RS05355	0.46	-1.7
1,185,643	-		RR42_RS05355	0.46	-0.3
1,185,643	-		RR42_RS05355	0.46	-0.7
1,185,643	-		RR42_RS05355	0.46	-2.2
1,185,910	-		RR42_RS05355	0.71	-0.3
1,186,042	-		RR42_RS05355	0.83	+0.4
1,186,042	-		RR42_RS05355	0.83	+0.8
1,186,042	-		RR42_RS05355	0.83	+3.0
1,186,044	+		RR42_RS05355	0.83	-0.6
1,186,044	+		RR42_RS05355	0.83	+4.2
1,186,044	+		RR42_RS05355	0.83	+0.3
1,186,045	+		RR42_RS05355	0.83	+0.9
1,186,045	-		RR42_RS05355	0.83	+0.3
1,186,280	+				+0.4
1,186,284	-				-2.7
1,186,296	+				-3.5
1,186,345	+				+0.5
1,186,346	-				-0.4
1,186,346	-				-0.8
1,186,346	-				-1.4
1,186,399	-				-1.1
1,186,399	-				-3.9
1,186,399	-				-1.0
1,186,890	+		RR42_RS05360	0.89	-0.5
1,186,891	-		RR42_RS05360	0.89	-1.5
1,187,119	+		RR42_RS05365	0.53	+0.7
1,187,120	-		RR42_RS05365	0.53	-1.9
1,187,120	-		RR42_RS05365	0.53	+1.4
1,187,120	-		RR42_RS05365	0.53	+0.4
1,187,132	+		RR42_RS05365	0.57	-1.4
1,187,132	+		RR42_RS05365	0.57	-1.5
1,187,133	-		RR42_RS05365	0.57	+1.0
1,187,133	-		RR42_RS05365	0.57	+1.4