Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05280

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,164,377	+		RR42_RS05275	0.39	-0.4
1,164,377	+		RR42_RS05275	0.39	+0.3
1,164,377	+		RR42_RS05275	0.39	-0.8
1,164,378	-		RR42_RS05275	0.39	-1.8
1,164,378	-		RR42_RS05275	0.39	+0.9
1,164,590	+		RR42_RS05275	0.57	+0.1
1,164,591	-		RR42_RS05275	0.57	+0.2
1,164,650	+		RR42_RS05275	0.62	-2.3
1,164,650	+		RR42_RS05275	0.62	-0.3
1,164,650	+		RR42_RS05275	0.62	+2.9
1,164,656	+		RR42_RS05275	0.62	-3.1
1,164,656	+		RR42_RS05275	0.62	+0.4
1,164,656	+		RR42_RS05275	0.62	+1.1
1,164,657	-		RR42_RS05275	0.63	+1.6
1,164,657	-		RR42_RS05275	0.63	-0.0
1,164,657	-		RR42_RS05275	0.63	-1.2
1,164,859	+		RR42_RS05275	0.79	+2.3
1,164,860	-		RR42_RS05275	0.79	-1.9
1,164,867	+		RR42_RS05275	0.80	+0.3
1,164,944	-		RR42_RS05275	0.86	+0.6
1,164,992	+				+0.6
1,164,992	+				+0.9
1,164,992	+				+0.6
1,164,993	-				-1.4
1,164,993	-				+0.1
1,165,183	-				-1.5
1,165,365	+				-1.8
1,165,365	+				+0.9
1,165,366	-				+0.4
1,165,366	-				+0.9
1,165,366	-				-0.6
1,165,367	+				+0.5
1,165,368	-				+0.8
1,165,368	-				+0.5
1,165,368	-				-0.4
1,165,368	-				+0.2
1,165,371	+				+1.6
1,165,371	+				-0.4
1,165,372	-				-2.5
1,165,412	-		RR42_RS05280	0.10	-1.5
1,165,479	+		RR42_RS05280	0.21	+2.5
1,165,479	+		RR42_RS05280	0.21	-1.2
1,165,479	+		RR42_RS05280	0.21	+0.5
1,165,479	+		RR42_RS05280	0.21	+0.9
1,165,481	+		RR42_RS05280	0.22	+1.9
1,165,481	+		RR42_RS05280	0.22	-0.1
1,165,481	+		RR42_RS05280	0.22	+1.3
1,165,482	-		RR42_RS05280	0.22	-1.8
1,165,482	-		RR42_RS05280	0.22	-3.1
1,165,482	-		RR42_RS05280	0.22	+0.5
1,165,482	-		RR42_RS05280	0.22	+1.8
1,165,482	-		RR42_RS05280	0.22	+1.2
1,165,487	+		RR42_RS05280	0.22	-0.7
1,165,751	+		RR42_RS05280	0.65	+1.5
1,165,949	+				+0.6
1,165,950	-				+0.5
1,165,950	-				-0.4
1,165,984	-				-2.4
1,166,011	+				+0.2
1,166,089	+				-1.4
1,166,089	+				-2.0
1,166,089	+				+0.8
1,166,110	+				-0.4
1,166,111	-				+1.9
1,166,111	-				+1.7
1,166,111	-				+0.9
1,166,111	-				+1.1
1,166,149	+				-2.0
1,166,149	+				+1.1
1,166,272	+		RR42_RS05285	0.15	-3.1
1,166,272	+		RR42_RS05285	0.15	+1.4
1,166,273	-		RR42_RS05285	0.15	-0.6
1,166,404	+		RR42_RS05285	0.23	+2.6
1,166,405	-		RR42_RS05285	0.23	-0.7
1,166,405	-		RR42_RS05285	0.23	-0.7
1,166,434	+		RR42_RS05285	0.24	-0.9
1,166,435	-		RR42_RS05285	0.24	-2.1
1,166,602	+		RR42_RS05285	0.34	+1.6
1,166,706	+		RR42_RS05285	0.40	+0.6
1,166,706	+		RR42_RS05285	0.40	-1.8
1,166,722	+		RR42_RS05285	0.41	+1.9
1,166,722	+		RR42_RS05285	0.41	+0.6
1,166,723	-		RR42_RS05285	0.41	+0.6
1,166,723	-		RR42_RS05285	0.41	+0.3
1,166,723	-		RR42_RS05285	0.41	+1.3
1,166,740	+		RR42_RS05285	0.42	-1.0
1,166,780	+		RR42_RS05285	0.44	+1.2
1,166,782	+		RR42_RS05285	0.44	-3.2
1,166,783	-		RR42_RS05285	0.44	-1.8
1,166,783	-		RR42_RS05285	0.44	+3.1
1,166,783	-		RR42_RS05285	0.44	-0.7
1,166,783	-		RR42_RS05285	0.44	+1.1
1,166,783	-		RR42_RS05285	0.44	+2.2
1,166,812	+		RR42_RS05285	0.46	+1.3
1,166,812	+		RR42_RS05285	0.46	+1.1
1,166,909	-		RR42_RS05285	0.51	+1.6