Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05270

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,163,095	+		RR42_RS05265	0.85	+0.7
1,163,095	+		RR42_RS05265	0.85	+0.9
1,163,095	+		RR42_RS05265	0.85	-0.3
1,163,096	-		RR42_RS05265	0.85	-0.4
1,163,107	+		RR42_RS05265	0.87	+0.4
1,163,107	+		RR42_RS05265	0.87	-4.5
1,163,107	+		RR42_RS05265	0.87	+1.2
1,163,108	-		RR42_RS05265	0.87	-1.2
1,163,108	-		RR42_RS05265	0.87	-0.3
1,163,108	-		RR42_RS05265	0.87	-1.9
1,163,108	-		RR42_RS05265	0.87	+2.0
1,163,218	+				+1.5
1,163,219	-				-2.1
1,163,313	+				+0.4
1,163,431	+				+0.3
1,163,432	-				+0.8
1,163,432	-				+1.3
1,163,467	+				-2.8
1,163,468	-				-0.8
1,163,540	+				+1.1
1,163,540	+				+1.0
1,163,698	+		RR42_RS05270	0.51	+0.5
1,163,699	-		RR42_RS05270	0.51	-0.2
1,163,699	-		RR42_RS05270	0.51	+0.6
1,163,699	-		RR42_RS05270	0.51	+3.8
1,163,815	+		RR42_RS05270	0.84	+1.2
1,163,857	+				+0.4
1,163,858	-				+2.6
1,163,858	-				+1.0
1,163,869	+				-3.5
1,163,869	+				-1.4
1,163,870	-				+1.3
1,163,912	+				+4.4
1,163,912	+				-0.4
1,163,912	+				+1.3
1,163,913	-				-2.1
1,163,913	-				+2.4
1,163,915	-				+0.8
1,163,915	-				+1.9
1,163,915	-				+1.6
1,163,991	-				+1.4
1,164,092	+		RR42_RS05275	0.16	-0.7
1,164,107	+		RR42_RS05275	0.17	-0.9
1,164,153	-		RR42_RS05275	0.21	+1.4
1,164,164	+		RR42_RS05275	0.22	-0.2
1,164,164	+		RR42_RS05275	0.22	-0.9
1,164,165	-		RR42_RS05275	0.22	-3.2
1,164,165	-		RR42_RS05275	0.22	-1.1
1,164,206	+		RR42_RS05275	0.25	+0.1
1,164,206	+		RR42_RS05275	0.25	-0.2
1,164,206	+		RR42_RS05275	0.25	+0.4
1,164,207	-		RR42_RS05275	0.25	+0.1
1,164,290	+		RR42_RS05275	0.32	-0.6
1,164,291	-		RR42_RS05275	0.32	+1.0
1,164,314	+		RR42_RS05275	0.34	+2.4
1,164,315	-		RR42_RS05275	0.34	+1.8
1,164,315	-		RR42_RS05275	0.34	+2.6
1,164,377	+		RR42_RS05275	0.39	-0.4
1,164,377	+		RR42_RS05275	0.39	+0.3
1,164,377	+		RR42_RS05275	0.39	-0.8
1,164,378	-		RR42_RS05275	0.39	-1.8
1,164,378	-		RR42_RS05275	0.39	+0.9
1,164,590	+		RR42_RS05275	0.57	+0.1
1,164,591	-		RR42_RS05275	0.57	+0.2
1,164,650	+		RR42_RS05275	0.62	-2.3
1,164,650	+		RR42_RS05275	0.62	-0.3
1,164,650	+		RR42_RS05275	0.62	+2.9
1,164,656	+		RR42_RS05275	0.62	-3.1
1,164,656	+		RR42_RS05275	0.62	+0.4
1,164,656	+		RR42_RS05275	0.62	+1.1
1,164,657	-		RR42_RS05275	0.63	+1.6
1,164,657	-		RR42_RS05275	0.63	-0.0
1,164,657	-		RR42_RS05275	0.63	-1.2
1,164,859	+		RR42_RS05275	0.79	+2.3
1,164,860	-		RR42_RS05275	0.79	-1.9
1,164,867	+		RR42_RS05275	0.80	+0.3