Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05000

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,102,881	-				+0.9
1,102,942	+				-0.0
1,102,942	+				-2.1
1,102,988	+				-0.9
1,102,989	-				+1.6
1,102,989	-				+0.6
1,103,125	+		RR42_RS04990	0.40	+0.2
1,103,608	+		RR42_RS04995	0.76	-1.5
1,103,608	+		RR42_RS04995	0.76	+0.8
1,103,609	-		RR42_RS04995	0.76	+0.0
1,103,609	-		RR42_RS04995	0.76	-1.5
1,103,609	-		RR42_RS04995	0.76	+1.7
1,103,609	-		RR42_RS04995	0.76	-2.0
1,103,873	+				+1.6
1,103,873	+				-1.4
1,103,873	+				+1.1
1,103,873	+				+1.8
1,103,874	-				+1.1
1,103,874	-				-0.3
1,103,874	-				+1.2
1,103,874	-				+0.7
1,103,879	+				+1.2
1,103,880	-				+1.1
1,104,028	-				-1.3
1,104,029	+				-0.1
1,104,040	+		RR42_RS05000	0.11	+1.3
1,104,040	+		RR42_RS05000	0.11	+1.8
1,104,040	+		RR42_RS05000	0.11	+1.5
1,104,041	-		RR42_RS05000	0.11	+1.9
1,104,041	-		RR42_RS05000	0.11	+0.7
1,104,385	+		RR42_RS05000	0.32	-1.1
1,104,385	+		RR42_RS05000	0.32	+2.1
1,104,386	-		RR42_RS05000	0.32	+1.4
1,104,413	-		RR42_RS05000	0.34	+0.6
1,104,470	-		RR42_RS05000	0.37	+1.2
1,104,829	+		RR42_RS05000	0.59	+1.2
1,104,830	-		RR42_RS05000	0.59	-1.5
1,104,868	+		RR42_RS05000	0.62	-0.4
1,104,868	+		RR42_RS05000	0.62	+0.2
1,104,869	-		RR42_RS05000	0.62	-1.1
1,104,952	+		RR42_RS05000	0.67	+1.6
1,104,953	-		RR42_RS05000	0.67	+0.7
1,105,090	+		RR42_RS05000	0.75	-2.5
1,105,090	+		RR42_RS05000	0.75	-2.0
1,105,091	-		RR42_RS05000	0.75	+0.6
1,105,091	-		RR42_RS05000	0.75	+1.3
1,105,168	+		RR42_RS05000	0.80	-1.2
1,105,168	+		RR42_RS05000	0.80	-0.6
1,105,169	-		RR42_RS05000	0.80	+2.0
1,105,169	-		RR42_RS05000	0.80	+1.6
1,105,216	+		RR42_RS05000	0.83	-0.1
1,105,217	-		RR42_RS05000	0.83	-1.0
1,105,351	+				+0.7
1,105,352	-				+0.2
1,105,352	-				-2.7
1,105,352	-				-2.1
1,105,352	-				+0.4
1,105,352	-				-2.8
1,105,352	-				+0.5
1,105,417	+				+0.8
1,105,417	+				+0.6
1,105,417	+				+0.6
1,105,418	-				+2.3
1,105,510	+				-0.2
1,105,510	+				+0.9
1,105,510	+				+1.2
1,106,158	+		RR42_RS05005	0.51	-0.0
1,106,159	-		RR42_RS05005	0.51	-3.8
1,106,159	-		RR42_RS05005	0.51	-2.1
1,106,373	+		RR42_RS05005	0.68	-0.9
1,106,374	-		RR42_RS05005	0.68	-3.5
1,106,374	-		RR42_RS05005	0.68	+1.1