Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04960

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,095,208	+		RR42_RS04950	0.37	-1.3
1,095,211	+		RR42_RS04950	0.38	-0.9
1,095,211	+		RR42_RS04950	0.38	-2.5
1,095,212	-		RR42_RS04950	0.39	-2.5
1,095,236	-		RR42_RS04950	0.48	-1.2
1,095,244	+		RR42_RS04950	0.52	+0.0
1,095,247	+		RR42_RS04950	0.53	-0.2
1,095,248	-		RR42_RS04950	0.53	-4.0
1,095,248	-		RR42_RS04950	0.53	+2.7
1,095,283	+		RR42_RS04950	0.67	+1.5
1,095,284	-		RR42_RS04950	0.68	-2.9
1,095,301	+		RR42_RS04950	0.75	-2.0
1,095,325	+		RR42_RS04950	0.85	-0.3
1,095,325	+		RR42_RS04950	0.85	-1.4
1,095,328	+		RR42_RS04950	0.86	-0.6
1,095,329	-		RR42_RS04950	0.86	-0.4
1,095,329	-		RR42_RS04950	0.86	-1.7
1,095,329	-		RR42_RS04950	0.86	+1.2
1,095,329	-		RR42_RS04950	0.86	+0.8
1,095,343	+				+1.7
1,095,344	-				-1.2
1,095,355	+				+1.9
1,095,356	-				+0.9
1,095,358	+				-2.5
1,095,358	+				-2.5
1,095,359	-				+1.5
1,095,373	+				+0.9
1,095,379	+				+1.6
1,095,391	+				+0.5
1,095,391	+				-4.2
1,095,406	+				+0.7
1,095,407	-				+1.3
1,095,411	+				-0.7
1,095,411	+				-2.7
1,095,411	+				+0.8
1,095,433	+				+0.8
1,095,443	-				-2.5
1,095,451	+				-2.5
1,095,452	-				-2.5
1,095,460	+				-0.5
1,095,460	+				+0.1
1,095,460	+				-2.3
1,095,461	-				+0.4
1,095,461	-				+1.6
1,095,461	-				+0.3
1,095,461	-				-0.4
1,095,461	-				-0.9
1,095,461	-				-3.8
1,095,461	-				+0.4
1,095,461	-				+1.4
1,095,469	+				+2.1
1,095,469	+				-2.0
1,095,470	-				+0.0
1,095,470	-				+0.5
1,095,470	-				-0.0
1,095,478	+				+2.7
1,095,478	+				+1.8
1,095,478	+				-0.7
1,095,478	+				+1.9
1,095,478	+				-2.2
1,095,478	+				-4.1
1,095,478	+				-0.9
1,095,479	-				+0.1
1,095,479	-				-0.2
1,095,479	-				+1.6
1,095,479	-				-2.1
1,095,479	-				-0.4
1,095,479	-				+1.4
1,095,479	-				-4.0
1,095,481	+				-1.0
1,095,481	+				+1.9
1,095,481	+				+1.1
1,095,481	+				-1.7
1,095,488	-				+0.5
1,095,609	+				+1.1
1,095,609	+				+0.6
1,095,609	+				-1.5
1,095,609	+				-1.9
1,095,610	-				-2.0
1,095,610	-				+1.9
1,095,610	-				-0.3
1,095,797	+		RR42_RS04955	0.41	+1.9
1,095,925	+		RR42_RS04955	0.86	+0.1
1,095,951	+				-1.1
1,095,984	-				-1.9
1,096,006	+				-2.2
1,096,006	+				+1.0
1,096,006	+				-0.3
1,096,006	+				+0.8
1,096,006	+				-0.5
1,096,007	-				+0.5
1,096,007	-				-0.0
1,096,010	-				-3.1
1,096,044	+				-1.1
1,096,044	+				-2.5
1,096,044	+				+1.1
1,096,044	+				-0.9
1,096,094	+				+0.2
1,096,136	+				-2.5
1,096,136	+				+0.3
1,096,136	+				-0.4
1,096,137	-				-0.0
1,096,442	+		RR42_RS04960	0.35	+2.1
1,096,493	-		RR42_RS04960	0.42	+1.7
1,096,584	-		RR42_RS04960	0.55	+1.9
1,096,584	-		RR42_RS04960	0.55	-0.4
1,096,612	+		RR42_RS04960	0.60	+0.3
1,096,616	+		RR42_RS04960	0.60	+2.7
1,096,616	+		RR42_RS04960	0.60	+1.5
1,096,616	+		RR42_RS04960	0.60	-1.9
1,096,617	-		RR42_RS04960	0.60	-0.7
1,096,617	-		RR42_RS04960	0.60	-0.0
1,096,651	+		RR42_RS04960	0.65	+1.6
1,096,651	+		RR42_RS04960	0.65	+1.9
1,096,662	-		RR42_RS04960	0.67	+1.3
1,096,854	-				+1.0
1,097,074	+				-2.9
1,097,123	+				+0.3
1,097,123	+				-1.1
1,097,156	+				-1.5
1,097,156	+				+1.2
1,097,157	-				+1.2
1,097,157	-				+2.2
1,097,269	+				+1.1
1,097,270	-				-0.8
1,097,300	+				-2.0
1,097,301	-				-5.1
1,097,301	-				-3.8
1,097,301	-				+0.9
1,097,355	+				+1.7
1,097,356	-				-1.3
1,097,356	-				-2.2
1,097,359	-				+1.8
1,097,378	-				-0.7
1,097,378	-				-2.6
1,097,414	+				+0.5
1,097,421	+				+1.5
1,097,447	+				-3.3
1,097,541	+				-0.7
1,097,541	+				+0.7
1,097,655	-		RR42_RS04965	0.20	+0.8
1,097,655	-		RR42_RS04965	0.20	-1.3
1,097,806	+		RR42_RS04965	0.68	+0.4
1,097,806	+		RR42_RS04965	0.68	-2.0
1,097,806	+		RR42_RS04965	0.68	+0.4
1,097,807	-		RR42_RS04965	0.68	-0.6