Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04735

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04730 and RR42_RS04735 are separated by 105 nucleotidesRR42_RS04735 and RR42_RS04740 are separated by 258 nucleotides RR42_RS04730: RR42_RS04730 - phosphoribosylamine--glycine ligase, at 1,052,626 to 1,053,894 _RS04730 RR42_RS04735: RR42_RS04735 - hypothetical protein, at 1,054,000 to 1,054,725 _RS04735 RR42_RS04740: RR42_RS04740 - ATP-binding protein, at 1,054,984 to 1,056,534 _RS04740 Position (kb) 1053 1054 1055Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1053.900 kb on - strandat 1054.482 kb on - strand, within RR42_RS04735at 1054.699 kb on - strandat 1054.830 kb on - strandat 1054.830 kb on - strandat 1054.830 kb on - strandat 1054.830 kb on - strandat 1054.830 kb on - strandat 1054.863 kb on - strandat 1054.863 kb on - strandat 1054.880 kb on - strandat 1055.461 kb on + strand, within RR42_RS04740at 1055.461 kb on + strand, within RR42_RS04740at 1055.461 kb on + strand, within RR42_RS04740at 1055.461 kb on + strand, within RR42_RS04740at 1055.462 kb on - strand, within RR42_RS04740at 1055.497 kb on + strand, within RR42_RS04740at 1055.684 kb on - strand, within RR42_RS04740at 1055.684 kb on - strand, within RR42_RS04740

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,053,900 - +0.5
1,054,482 - RR42_RS04735 0.66 -4.4
1,054,699 - -2.6
1,054,830 - -0.4
1,054,830 - -2.0
1,054,830 - +2.0
1,054,830 - +2.4
1,054,830 - -1.4
1,054,863 - +0.8
1,054,863 - +2.0
1,054,880 - +0.8
1,055,461 + RR42_RS04740 0.31 +0.7
1,055,461 + RR42_RS04740 0.31 -2.7
1,055,461 + RR42_RS04740 0.31 +0.1
1,055,461 + RR42_RS04740 0.31 -2.6
1,055,462 - RR42_RS04740 0.31 -3.1
1,055,497 + RR42_RS04740 0.33 +0.0
1,055,684 - RR42_RS04740 0.45 -2.2
1,055,684 - RR42_RS04740 0.45 -2.2

Or see this region's nucleotide sequence