Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04650 and RR42_RS04655 are separated by 98 nucleotides RR42_RS04655 and RR42_RS04660 overlap by 53 nucleotides RR42_RS04660 and RR42_RS04665 are separated by 11 nucleotides
RR42_RS04650: RR42_RS04650 - DNA polymerase III subunit alpha, at 1,034,185 to 1,037,697
_RS04650
RR42_RS04655: RR42_RS04655 - glycosyl transferase, at 1,037,796 to 1,039,052
_RS04655
RR42_RS04660: RR42_RS04660 - glycosyl transferase family 2, at 1,039,000 to 1,039,767
_RS04660
RR42_RS04665: RR42_RS04665 - cell shape-determining protein, at 1,039,779 to 1,041,032
_RS04665
Position (kb) 1037
1038
1039
1040 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1037.689 kb on + strand at 1037.689 kb on + strand at 1037.689 kb on + strand at 1037.690 kb on - strand at 1037.782 kb on + strand at 1037.782 kb on + strand at 1037.782 kb on + strand at 1037.782 kb on + strand at 1037.783 kb on - strand at 1037.783 kb on - strand at 1037.982 kb on - strand, within RR42_RS04655 at 1038.058 kb on + strand, within RR42_RS04655 at 1038.058 kb on + strand, within RR42_RS04655 at 1038.058 kb on + strand, within RR42_RS04655 at 1038.058 kb on + strand, within RR42_RS04655 at 1038.058 kb on + strand, within RR42_RS04655 at 1038.059 kb on - strand, within RR42_RS04655 at 1038.059 kb on - strand, within RR42_RS04655 at 1038.060 kb on + strand, within RR42_RS04655 at 1038.060 kb on + strand, within RR42_RS04655 at 1038.060 kb on + strand, within RR42_RS04655 at 1038.060 kb on + strand, within RR42_RS04655 at 1038.061 kb on - strand, within RR42_RS04655 at 1038.061 kb on - strand, within RR42_RS04655 at 1038.061 kb on - strand, within RR42_RS04655 at 1038.132 kb on + strand, within RR42_RS04655 at 1038.132 kb on + strand, within RR42_RS04655 at 1038.150 kb on + strand, within RR42_RS04655 at 1038.285 kb on + strand, within RR42_RS04655 at 1038.285 kb on + strand, within RR42_RS04655 at 1038.285 kb on + strand, within RR42_RS04655 at 1038.285 kb on + strand, within RR42_RS04655 at 1038.286 kb on - strand, within RR42_RS04655 at 1038.286 kb on - strand, within RR42_RS04655 at 1038.286 kb on - strand, within RR42_RS04655 at 1038.372 kb on + strand, within RR42_RS04655 at 1038.373 kb on - strand, within RR42_RS04655 at 1038.373 kb on - strand, within RR42_RS04655 at 1038.441 kb on + strand, within RR42_RS04655 at 1038.441 kb on + strand, within RR42_RS04655 at 1038.441 kb on + strand, within RR42_RS04655 at 1038.441 kb on + strand, within RR42_RS04655 at 1038.442 kb on - strand, within RR42_RS04655 at 1038.442 kb on - strand, within RR42_RS04655 at 1038.442 kb on - strand, within RR42_RS04655 at 1038.442 kb on - strand, within RR42_RS04655 at 1038.442 kb on - strand, within RR42_RS04655 at 1038.649 kb on - strand, within RR42_RS04655 at 1039.778 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,037,689 + +1.0 1,037,689 + +2.1 1,037,689 + +2.6 1,037,690 - +2.1 1,037,782 + -0.6 1,037,782 + -2.2 1,037,782 + -2.0 1,037,782 + -1.2 1,037,783 - +0.3 1,037,783 - -1.0 1,037,982 - RR42_RS04655 0.15 -1.0 1,038,058 + RR42_RS04655 0.21 +2.2 1,038,058 + RR42_RS04655 0.21 -3.3 1,038,058 + RR42_RS04655 0.21 +1.0 1,038,058 + RR42_RS04655 0.21 -1.8 1,038,058 + RR42_RS04655 0.21 +1.2 1,038,059 - RR42_RS04655 0.21 +0.9 1,038,059 - RR42_RS04655 0.21 +0.5 1,038,060 + RR42_RS04655 0.21 -0.4 1,038,060 + RR42_RS04655 0.21 +0.6 1,038,060 + RR42_RS04655 0.21 +0.7 1,038,060 + RR42_RS04655 0.21 +0.4 1,038,061 - RR42_RS04655 0.21 +0.6 1,038,061 - RR42_RS04655 0.21 +0.2 1,038,061 - RR42_RS04655 0.21 -2.7 1,038,132 + RR42_RS04655 0.27 -3.2 1,038,132 + RR42_RS04655 0.27 +0.5 1,038,150 + RR42_RS04655 0.28 -2.4 1,038,285 + RR42_RS04655 0.39 +0.6 1,038,285 + RR42_RS04655 0.39 +2.6 1,038,285 + RR42_RS04655 0.39 +0.0 1,038,285 + RR42_RS04655 0.39 +0.1 1,038,286 - RR42_RS04655 0.39 +2.3 1,038,286 - RR42_RS04655 0.39 +1.6 1,038,286 - RR42_RS04655 0.39 +0.3 1,038,372 + RR42_RS04655 0.46 +0.0 1,038,373 - RR42_RS04655 0.46 -0.6 1,038,373 - RR42_RS04655 0.46 +0.9 1,038,441 + RR42_RS04655 0.51 +1.6 1,038,441 + RR42_RS04655 0.51 +2.3 1,038,441 + RR42_RS04655 0.51 +0.2 1,038,441 + RR42_RS04655 0.51 -0.4 1,038,442 - RR42_RS04655 0.51 -2.3 1,038,442 - RR42_RS04655 0.51 -0.1 1,038,442 - RR42_RS04655 0.51 -0.5 1,038,442 - RR42_RS04655 0.51 +0.6 1,038,442 - RR42_RS04655 0.51 +1.5 1,038,649 - RR42_RS04655 0.68 +1.3 1,039,778 + -2.1
Or see this region's nucleotide sequence