Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04375 and RR42_RS04380 are separated by 85 nucleotides
RR42_RS04375: RR42_RS04375 - magnesium transporter, at 973,188 to 974,501
_RS04375
RR42_RS04380: RR42_RS04380 - LysR family transcriptional regulator, at 974,587 to 975,540
_RS04380
Position (kb) 973
974
975 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 972.365 kb on - strand at 972.719 kb on + strand at 972.803 kb on + strand at 972.803 kb on + strand at 972.863 kb on + strand at 972.863 kb on + strand at 972.864 kb on - strand at 972.864 kb on - strand at 972.909 kb on + strand at 972.971 kb on + strand at 972.972 kb on - strand at 973.052 kb on + strand at 973.358 kb on - strand, within RR42_RS04375 at 973.477 kb on + strand, within RR42_RS04375 at 973.477 kb on + strand, within RR42_RS04375 at 973.477 kb on + strand, within RR42_RS04375 at 973.503 kb on + strand, within RR42_RS04375 at 973.732 kb on + strand, within RR42_RS04375 at 974.086 kb on - strand, within RR42_RS04375 at 974.086 kb on - strand, within RR42_RS04375 at 974.288 kb on + strand, within RR42_RS04375 at 974.501 kb on + strand at 974.501 kb on + strand at 974.501 kb on + strand at 974.501 kb on + strand at 974.502 kb on - strand at 974.502 kb on - strand at 974.502 kb on - strand at 974.554 kb on + strand at 974.554 kb on + strand at 974.593 kb on - strand at 974.861 kb on + strand, within RR42_RS04380 at 974.862 kb on - strand, within RR42_RS04380 at 974.862 kb on - strand, within RR42_RS04380 at 975.169 kb on + strand, within RR42_RS04380 at 975.169 kb on + strand, within RR42_RS04380 at 975.326 kb on + strand, within RR42_RS04380 at 975.347 kb on + strand, within RR42_RS04380
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 972,365 - -2.4 972,719 + +0.2 972,803 + +0.8 972,803 + +2.1 972,863 + -0.1 972,863 + +1.1 972,864 - -0.8 972,864 - -2.9 972,909 + +2.7 972,971 + +2.6 972,972 - +0.3 973,052 + -2.1 973,358 - RR42_RS04375 0.13 -3.0 973,477 + RR42_RS04375 0.22 -1.2 973,477 + RR42_RS04375 0.22 -3.7 973,477 + RR42_RS04375 0.22 -2.3 973,503 + RR42_RS04375 0.24 -2.2 973,732 + RR42_RS04375 0.41 -4.6 974,086 - RR42_RS04375 0.68 -1.9 974,086 - RR42_RS04375 0.68 -5.2 974,288 + RR42_RS04375 0.84 -4.1 974,501 + -2.9 974,501 + -1.9 974,501 + -0.4 974,501 + -5.5 974,502 - +1.8 974,502 - -3.0 974,502 - -3.5 974,554 + -4.3 974,554 + -1.2 974,593 - +0.7 974,861 + RR42_RS04380 0.29 -0.1 974,862 - RR42_RS04380 0.29 +1.2 974,862 - RR42_RS04380 0.29 -2.6 975,169 + RR42_RS04380 0.61 +0.6 975,169 + RR42_RS04380 0.61 -0.7 975,326 + RR42_RS04380 0.77 +0.1 975,347 + RR42_RS04380 0.80 +0.9
Or see this region's nucleotide sequence