Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04360 and RR42_RS04365 are separated by 78 nucleotides RR42_RS04365 and RR42_RS04370 are separated by 247 nucleotides
RR42_RS04360: RR42_RS04360 - seryl-tRNA synthetase, at 969,558 to 970,871
_RS04360
RR42_RS04365: RR42_RS04365 - tRNA-Ser, at 970,950 to 971,039
_RS04365
RR42_RS04370: RR42_RS04370 - hypothetical protein, at 971,287 to 972,186
_RS04370
Position (kb) 971
972
973 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 971.284 kb on - strand at 971.284 kb on - strand at 971.380 kb on + strand, within RR42_RS04370 at 971.380 kb on + strand, within RR42_RS04370 at 971.407 kb on + strand, within RR42_RS04370 at 971.408 kb on - strand, within RR42_RS04370 at 971.422 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand at 971.476 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand, within RR42_RS04370 at 971.476 kb on + strand, within RR42_RS04370 at 971.477 kb on - strand, within RR42_RS04370 at 971.477 kb on - strand, within RR42_RS04370 at 971.477 kb on - strand, within RR42_RS04370 at 971.477 kb on - strand, within RR42_RS04370 at 971.647 kb on + strand, within RR42_RS04370 at 971.647 kb on + strand, within RR42_RS04370 at 971.668 kb on + strand, within RR42_RS04370 at 971.669 kb on - strand, within RR42_RS04370 at 971.773 kb on + strand, within RR42_RS04370 at 971.774 kb on - strand, within RR42_RS04370 at 971.774 kb on - strand, within RR42_RS04370 at 971.774 kb on - strand, within RR42_RS04370 at 971.884 kb on - strand, within RR42_RS04370 at 971.884 kb on - strand, within RR42_RS04370 at 972.365 kb on - strand at 972.719 kb on + strand at 972.803 kb on + strand at 972.803 kb on + strand at 972.863 kb on + strand at 972.863 kb on + strand at 972.864 kb on - strand at 972.864 kb on - strand at 972.909 kb on + strand at 972.971 kb on + strand at 972.972 kb on - strand at 973.052 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 971,284 - -1.3 971,284 - -3.6 971,380 + RR42_RS04370 0.10 -3.7 971,380 + RR42_RS04370 0.10 +2.0 971,407 + RR42_RS04370 0.13 +0.0 971,408 - RR42_RS04370 0.13 +1.1 971,422 + RR42_RS04370 0.15 -0.1 971,476 + RR42_RS04370 0.21 -0.7 971,476 + +2.0 971,476 + RR42_RS04370 0.21 +0.1 971,476 + RR42_RS04370 0.21 +0.3 971,476 + RR42_RS04370 0.21 +0.7 971,476 + RR42_RS04370 0.21 +0.9 971,477 - RR42_RS04370 0.21 +1.7 971,477 - RR42_RS04370 0.21 -3.1 971,477 - RR42_RS04370 0.21 -1.3 971,477 - RR42_RS04370 0.21 -0.6 971,647 + RR42_RS04370 0.40 -1.4 971,647 + RR42_RS04370 0.40 +1.3 971,668 + RR42_RS04370 0.42 +0.7 971,669 - RR42_RS04370 0.42 -3.5 971,773 + RR42_RS04370 0.54 +0.3 971,774 - RR42_RS04370 0.54 -2.5 971,774 - RR42_RS04370 0.54 -0.6 971,774 - RR42_RS04370 0.54 +0.6 971,884 - RR42_RS04370 0.66 +0.3 971,884 - RR42_RS04370 0.66 -0.9 972,365 - -2.4 972,719 + +0.2 972,803 + +0.8 972,803 + +2.1 972,863 + -0.1 972,863 + +1.1 972,864 - -0.8 972,864 - -2.9 972,909 + +2.7 972,971 + +2.6 972,972 - +0.3 973,052 + -2.1
Or see this region's nucleotide sequence