Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04320 and RR42_RS04325 are separated by 133 nucleotides RR42_RS04325 and RR42_RS04330 are separated by 23 nucleotides RR42_RS04330 and RR42_RS04335 are separated by 236 nucleotides
RR42_RS04320: RR42_RS04320 - cell division protein FtsK, at 959,088 to 961,412
_RS04320
RR42_RS04325: RR42_RS04325 - membrane protein, at 961,546 to 962,184
_RS04325
RR42_RS04330: RR42_RS04330 - lipoprotein, at 962,208 to 962,612
_RS04330
RR42_RS04335: RR42_RS04335 - iron deficiency-induced protein A, at 962,849 to 963,892
_RS04335
Position (kb) 962
963 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 961.410 kb on + strand at 961.411 kb on - strand at 961.411 kb on - strand at 961.424 kb on + strand at 961.424 kb on + strand at 961.435 kb on + strand at 961.828 kb on + strand, within RR42_RS04325 at 961.828 kb on + strand, within RR42_RS04325 at 961.828 kb on + strand, within RR42_RS04325 at 961.834 kb on + strand, within RR42_RS04325 at 962.657 kb on + strand at 962.703 kb on - strand at 962.703 kb on - strand at 962.717 kb on - strand at 962.777 kb on + strand at 962.823 kb on + strand at 962.823 kb on + strand at 962.823 kb on + strand at 962.857 kb on - strand at 962.857 kb on - strand at 962.954 kb on + strand, within RR42_RS04335 at 962.970 kb on - strand, within RR42_RS04335 at 962.990 kb on + strand, within RR42_RS04335 at 962.991 kb on - strand, within RR42_RS04335 at 963.200 kb on + strand, within RR42_RS04335 at 963.200 kb on + strand, within RR42_RS04335 at 963.257 kb on + strand, within RR42_RS04335 at 963.258 kb on - strand, within RR42_RS04335 at 963.259 kb on + strand, within RR42_RS04335 at 963.260 kb on - strand, within RR42_RS04335 at 963.260 kb on - strand, within RR42_RS04335 at 963.296 kb on + strand, within RR42_RS04335 at 963.360 kb on - strand, within RR42_RS04335 at 963.527 kb on + strand, within RR42_RS04335 at 963.527 kb on + strand, within RR42_RS04335 at 963.528 kb on - strand, within RR42_RS04335 at 963.530 kb on + strand, within RR42_RS04335 at 963.530 kb on + strand, within RR42_RS04335 at 963.530 kb on + strand, within RR42_RS04335 at 963.530 kb on + strand, within RR42_RS04335 at 963.531 kb on - strand, within RR42_RS04335 at 963.531 kb on - strand, within RR42_RS04335 at 963.531 kb on - strand, within RR42_RS04335
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 961,410 + -0.0 961,411 - -4.4 961,411 - -1.2 961,424 + -0.2 961,424 + +0.0 961,435 + +0.0 961,828 + RR42_RS04325 0.44 +0.6 961,828 + RR42_RS04325 0.44 -2.7 961,828 + RR42_RS04325 0.44 -1.9 961,834 + RR42_RS04325 0.45 -3.4 962,657 + -0.2 962,703 - -2.2 962,703 - +0.3 962,717 - -2.2 962,777 + -2.1 962,823 + +0.9 962,823 + -1.0 962,823 + -0.4 962,857 - +0.3 962,857 - +0.9 962,954 + RR42_RS04335 0.10 -1.5 962,970 - RR42_RS04335 0.12 +0.8 962,990 + RR42_RS04335 0.14 +0.9 962,991 - RR42_RS04335 0.14 -0.4 963,200 + RR42_RS04335 0.34 -1.4 963,200 + RR42_RS04335 0.34 +0.6 963,257 + RR42_RS04335 0.39 -4.2 963,258 - RR42_RS04335 0.39 -2.9 963,259 + RR42_RS04335 0.39 +0.9 963,260 - RR42_RS04335 0.39 -1.0 963,260 - RR42_RS04335 0.39 +0.1 963,296 + RR42_RS04335 0.43 -1.3 963,360 - RR42_RS04335 0.49 -0.8 963,527 + RR42_RS04335 0.65 +0.2 963,527 + RR42_RS04335 0.65 -0.6 963,528 - RR42_RS04335 0.65 +1.0 963,530 + RR42_RS04335 0.65 -0.1 963,530 + RR42_RS04335 0.65 -0.6 963,530 + RR42_RS04335 0.65 +1.0 963,530 + RR42_RS04335 0.65 -1.8 963,531 - RR42_RS04335 0.65 -0.9 963,531 - RR42_RS04335 0.65 -2.0 963,531 - RR42_RS04335 0.65 +0.7
Or see this region's nucleotide sequence