Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04305 and RR42_RS04310 are separated by 13 nucleotides RR42_RS04310 and RR42_RS04315 are separated by 133 nucleotides RR42_RS04315 and RR42_RS04320 are separated by 170 nucleotides
RR42_RS04305: RR42_RS04305 - membrane protein, at 956,477 to 957,118
_RS04305
RR42_RS04310: RR42_RS04310 - DNA mismatch repair protein MutS, at 957,132 to 957,836
_RS04310
RR42_RS04315: RR42_RS04315 - thioredoxin reductase, at 957,970 to 958,917
_RS04315
RR42_RS04320: RR42_RS04320 - cell division protein FtsK, at 959,088 to 961,412
_RS04320
Position (kb) 957
958
959 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 957.056 kb on + strand at 957.056 kb on + strand at 957.056 kb on + strand at 957.057 kb on - strand at 957.057 kb on - strand at 957.210 kb on + strand, within RR42_RS04310 at 957.210 kb on + strand, within RR42_RS04310 at 957.211 kb on - strand, within RR42_RS04310 at 957.645 kb on + strand, within RR42_RS04310 at 957.646 kb on - strand, within RR42_RS04310 at 957.865 kb on + strand at 957.866 kb on - strand at 957.866 kb on - strand at 957.867 kb on + strand at 957.867 kb on + strand at 957.868 kb on - strand at 957.868 kb on - strand at 957.971 kb on + strand at 957.972 kb on - strand at 957.972 kb on - strand at 958.978 kb on + strand at 958.978 kb on + strand at 958.978 kb on + strand at 958.979 kb on - strand at 958.979 kb on - strand at 958.979 kb on - strand at 958.979 kb on - strand at 958.979 kb on - strand at 958.979 kb on - strand at 959.041 kb on + strand at 959.042 kb on - strand at 959.042 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 957,056 + +1.0 957,056 + -2.3 957,056 + -0.2 957,057 - -3.0 957,057 - +0.4 957,210 + RR42_RS04310 0.11 -2.7 957,210 + RR42_RS04310 0.11 -0.6 957,211 - RR42_RS04310 0.11 -2.5 957,645 + RR42_RS04310 0.73 -3.6 957,646 - RR42_RS04310 0.73 -1.9 957,865 + -3.9 957,866 - +1.0 957,866 - -2.8 957,867 + +0.4 957,867 + +0.6 957,868 - +0.5 957,868 - -0.4 957,971 + +1.0 957,972 - +1.1 957,972 - +0.9 958,978 + +0.8 958,978 + -0.3 958,978 + +0.9 958,979 - -1.3 958,979 - +0.4 958,979 - +1.0 958,979 - -3.1 958,979 - -0.4 958,979 - -4.3 959,041 + -0.3 959,042 - +0.3 959,042 - +0.4
Or see this region's nucleotide sequence