Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04310

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04300 and RR42_RS04305 are separated by 95 nucleotidesRR42_RS04305 and RR42_RS04310 are separated by 13 nucleotidesRR42_RS04310 and RR42_RS04315 are separated by 133 nucleotides RR42_RS04300: RR42_RS04300 - nitrogen regulatory protein P-II 1, at 956,043 to 956,381 _RS04300 RR42_RS04305: RR42_RS04305 - membrane protein, at 956,477 to 957,118 _RS04305 RR42_RS04310: RR42_RS04310 - DNA mismatch repair protein MutS, at 957,132 to 957,836 _RS04310 RR42_RS04315: RR42_RS04315 - thioredoxin reductase, at 957,970 to 958,917 _RS04315 Position (kb) 957 958Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 956.193 kb on + strand, within RR42_RS04300at 956.193 kb on + strand, within RR42_RS04300at 956.194 kb on - strand, within RR42_RS04300at 956.194 kb on - strand, within RR42_RS04300at 956.590 kb on + strand, within RR42_RS04305at 956.591 kb on - strand, within RR42_RS04305at 956.592 kb on + strand, within RR42_RS04305at 956.592 kb on + strand, within RR42_RS04305at 956.592 kb on + strand, within RR42_RS04305at 956.592 kb on + strand, within RR42_RS04305at 956.592 kb on + strand, within RR42_RS04305at 956.593 kb on - strand, within RR42_RS04305at 956.593 kb on - strand, within RR42_RS04305at 956.625 kb on + strand, within RR42_RS04305at 956.626 kb on - strand, within RR42_RS04305at 956.626 kb on - strand, within RR42_RS04305at 956.843 kb on + strand, within RR42_RS04305at 956.843 kb on + strand, within RR42_RS04305at 956.889 kb on + strand, within RR42_RS04305at 956.890 kb on - strand, within RR42_RS04305at 956.890 kb on - strand, within RR42_RS04305at 956.890 kb on - strand, within RR42_RS04305at 956.890 kb on - strand, within RR42_RS04305at 956.910 kb on + strand, within RR42_RS04305at 956.910 kb on + strand, within RR42_RS04305at 956.910 kb on + strand, within RR42_RS04305at 956.911 kb on - strand, within RR42_RS04305at 957.056 kb on + strandat 957.056 kb on + strandat 957.056 kb on + strandat 957.057 kb on - strandat 957.057 kb on - strandat 957.210 kb on + strand, within RR42_RS04310at 957.210 kb on + strand, within RR42_RS04310at 957.211 kb on - strand, within RR42_RS04310at 957.645 kb on + strand, within RR42_RS04310at 957.646 kb on - strand, within RR42_RS04310at 957.865 kb on + strandat 957.866 kb on - strandat 957.866 kb on - strandat 957.867 kb on + strandat 957.867 kb on + strandat 957.868 kb on - strandat 957.868 kb on - strandat 957.971 kb on + strandat 957.972 kb on - strandat 957.972 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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956,193 + RR42_RS04300 0.44 -3.3
956,193 + RR42_RS04300 0.44 -2.6
956,194 - RR42_RS04300 0.45 -1.1
956,194 - RR42_RS04300 0.45 -2.8
956,590 + RR42_RS04305 0.18 -2.8
956,591 - RR42_RS04305 0.18 +2.0
956,592 + RR42_RS04305 0.18 +0.2
956,592 + RR42_RS04305 0.18 -0.9
956,592 + RR42_RS04305 0.18 +2.0
956,592 + RR42_RS04305 0.18 +2.6
956,592 + RR42_RS04305 0.18 -3.3
956,593 - RR42_RS04305 0.18 +0.6
956,593 - RR42_RS04305 0.18 -0.8
956,625 + RR42_RS04305 0.23 -1.0
956,626 - RR42_RS04305 0.23 +0.7
956,626 - RR42_RS04305 0.23 -3.0
956,843 + RR42_RS04305 0.57 -0.8
956,843 + RR42_RS04305 0.57 +0.2
956,889 + RR42_RS04305 0.64 +0.1
956,890 - RR42_RS04305 0.64 +1.6
956,890 - RR42_RS04305 0.64 -1.8
956,890 - RR42_RS04305 0.64 -3.0
956,890 - RR42_RS04305 0.64 +1.4
956,910 + RR42_RS04305 0.67 +0.0
956,910 + RR42_RS04305 0.67 +1.4
956,910 + RR42_RS04305 0.67 +0.0
956,911 - RR42_RS04305 0.68 +1.3
957,056 + +1.0
957,056 + -2.3
957,056 + -0.2
957,057 - -3.0
957,057 - +0.4
957,210 + RR42_RS04310 0.11 -2.7
957,210 + RR42_RS04310 0.11 -0.6
957,211 - RR42_RS04310 0.11 -2.5
957,645 + RR42_RS04310 0.73 -3.6
957,646 - RR42_RS04310 0.73 -1.9
957,865 + -3.9
957,866 - +1.0
957,866 - -2.8
957,867 + +0.4
957,867 + +0.6
957,868 - +0.5
957,868 - -0.4
957,971 + +1.0
957,972 - +1.1
957,972 - +0.9

Or see this region's nucleotide sequence