Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04280 and RR42_RS04285 are separated by 189 nucleotides RR42_RS04285 and RR42_RS04290 are separated by 180 nucleotides RR42_RS04290 and RR42_RS04295 are separated by 29 nucleotides
RR42_RS04280: RR42_RS04280 - aldehyde dehydrogenase, at 951,613 to 953,049
_RS04280
RR42_RS04285: RR42_RS04285 - inorganic pyrophosphatase, at 953,239 to 953,766
_RS04285
RR42_RS04290: RR42_RS04290 - cytochrome B561, at 953,947 to 954,501
_RS04290
RR42_RS04295: RR42_RS04295 - hypothetical protein, at 954,531 to 955,790
_RS04295
Position (kb) 953
954 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 952.659 kb on + strand, within RR42_RS04280 at 952.716 kb on - strand, within RR42_RS04280 at 952.716 kb on - strand, within RR42_RS04280 at 952.984 kb on + strand at 952.984 kb on + strand at 953.054 kb on + strand at 953.195 kb on + strand at 953.195 kb on + strand at 953.196 kb on - strand at 953.196 kb on - strand at 953.764 kb on + strand at 953.764 kb on + strand at 953.765 kb on - strand at 953.886 kb on + strand at 953.900 kb on + strand at 953.939 kb on + strand at 953.939 kb on + strand at 953.955 kb on + strand at 953.955 kb on + strand at 953.955 kb on + strand at 953.986 kb on + strand at 954.020 kb on + strand, within RR42_RS04290 at 954.020 kb on + strand, within RR42_RS04290 at 954.021 kb on - strand, within RR42_RS04290 at 954.021 kb on - strand, within RR42_RS04290 at 954.043 kb on + strand, within RR42_RS04290 at 954.242 kb on + strand, within RR42_RS04290 at 954.242 kb on + strand, within RR42_RS04290 at 954.242 kb on + strand, within RR42_RS04290 at 954.243 kb on - strand, within RR42_RS04290 at 954.247 kb on + strand, within RR42_RS04290 at 954.247 kb on + strand, within RR42_RS04290 at 954.248 kb on - strand, within RR42_RS04290 at 954.257 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.415 kb on + strand, within RR42_RS04290 at 954.416 kb on - strand, within RR42_RS04290 at 954.460 kb on + strand at 954.460 kb on + strand at 954.460 kb on + strand at 954.461 kb on - strand at 954.461 kb on - strand at 954.461 kb on - strand at 954.475 kb on - strand at 954.499 kb on + strand at 954.574 kb on + strand at 954.723 kb on - strand, within RR42_RS04295 at 954.760 kb on + strand, within RR42_RS04295 at 954.761 kb on - strand, within RR42_RS04295 at 954.763 kb on + strand, within RR42_RS04295 at 954.764 kb on - strand, within RR42_RS04295 at 954.764 kb on - strand, within RR42_RS04295 at 954.764 kb on - strand, within RR42_RS04295 at 954.764 kb on - strand, within RR42_RS04295 at 954.764 kb on - strand, within RR42_RS04295
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 952,659 + RR42_RS04280 0.73 +1.7 952,716 - RR42_RS04280 0.77 -5.6 952,716 - RR42_RS04280 0.77 -3.7 952,984 + +0.3 952,984 + -3.7 953,054 + -0.0 953,195 + -0.3 953,195 + -0.4 953,196 - -1.7 953,196 - +1.0 953,764 + -2.7 953,764 + +1.9 953,765 - -0.4 953,886 + -2.7 953,900 + -2.7 953,939 + +0.4 953,939 + -0.3 953,955 + +0.8 953,955 + +1.3 953,955 + -3.1 953,986 + +1.3 954,020 + RR42_RS04290 0.13 +0.3 954,020 + RR42_RS04290 0.13 +1.3 954,021 - RR42_RS04290 0.13 -0.2 954,021 - RR42_RS04290 0.13 +1.1 954,043 + RR42_RS04290 0.17 -0.3 954,242 + RR42_RS04290 0.53 -1.6 954,242 + RR42_RS04290 0.53 +1.6 954,242 + RR42_RS04290 0.53 -2.5 954,243 - RR42_RS04290 0.53 -3.3 954,247 + RR42_RS04290 0.54 -0.6 954,247 + RR42_RS04290 0.54 +0.6 954,248 - RR42_RS04290 0.54 +0.2 954,257 + RR42_RS04290 0.56 -1.1 954,415 + RR42_RS04290 0.84 +0.4 954,415 + RR42_RS04290 0.84 +0.4 954,415 + RR42_RS04290 0.84 -2.8 954,415 + RR42_RS04290 0.84 +1.8 954,415 + RR42_RS04290 0.84 +1.2 954,415 + RR42_RS04290 0.84 +1.1 954,415 + RR42_RS04290 0.84 -4.3 954,416 - RR42_RS04290 0.85 -0.0 954,460 + -2.7 954,460 + -0.4 954,460 + +0.4 954,461 - -2.2 954,461 - -1.3 954,461 - +2.0 954,475 - -0.2 954,499 + +1.0 954,574 + -0.2 954,723 - RR42_RS04295 0.15 -3.3 954,760 + RR42_RS04295 0.18 +1.7 954,761 - RR42_RS04295 0.18 -4.2 954,763 + RR42_RS04295 0.18 +0.2 954,764 - RR42_RS04295 0.18 +0.5 954,764 - RR42_RS04295 0.18 -3.2 954,764 - RR42_RS04295 0.18 +0.7 954,764 - RR42_RS04295 0.18 -0.5 954,764 - RR42_RS04295 0.18 +2.2
Or see this region's nucleotide sequence