Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04065 and RR42_RS04070 overlap by 4 nucleotides RR42_RS04070 and RR42_RS04075 are separated by 526 nucleotides RR42_RS04075 and RR42_RS04080 are separated by 40 nucleotides
RR42_RS04065: RR42_RS04065 - LysR family transcriptional regulator, at 899,703 to 900,566
_RS04065
RR42_RS04070: RR42_RS04070 - quinone oxidoreductase, at 900,563 to 901,567
_RS04070
RR42_RS04075: RR42_RS04075 - molecular chaperone GroES, at 902,094 to 902,384
_RS04075
RR42_RS04080: RR42_RS04080 - molecular chaperone GroEL, at 902,425 to 904,068
_RS04080
Position (kb) 900
901
902 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 899.673 kb on + strand at 899.682 kb on + strand at 899.717 kb on + strand at 899.718 kb on - strand at 899.913 kb on - strand, within RR42_RS04065 at 900.179 kb on + strand, within RR42_RS04065 at 900.180 kb on - strand, within RR42_RS04065 at 900.186 kb on + strand, within RR42_RS04065 at 900.187 kb on + strand, within RR42_RS04065 at 900.480 kb on + strand at 900.564 kb on + strand at 900.780 kb on + strand, within RR42_RS04070 at 900.780 kb on + strand, within RR42_RS04070 at 900.780 kb on + strand, within RR42_RS04070 at 900.780 kb on + strand, within RR42_RS04070 at 900.856 kb on - strand, within RR42_RS04070 at 900.856 kb on - strand, within RR42_RS04070 at 900.909 kb on + strand, within RR42_RS04070 at 900.910 kb on - strand, within RR42_RS04070 at 900.939 kb on + strand, within RR42_RS04070 at 900.939 kb on + strand, within RR42_RS04070 at 900.939 kb on + strand, within RR42_RS04070 at 900.939 kb on + strand, within RR42_RS04070 at 900.940 kb on - strand, within RR42_RS04070 at 900.940 kb on - strand, within RR42_RS04070 at 900.940 kb on - strand, within RR42_RS04070 at 900.940 kb on - strand, within RR42_RS04070 at 900.951 kb on + strand, within RR42_RS04070 at 900.952 kb on - strand, within RR42_RS04070 at 900.952 kb on - strand, within RR42_RS04070 at 900.996 kb on + strand, within RR42_RS04070 at 901.172 kb on + strand, within RR42_RS04070 at 901.172 kb on + strand, within RR42_RS04070 at 901.173 kb on - strand, within RR42_RS04070 at 901.173 kb on - strand, within RR42_RS04070 at 901.299 kb on + strand, within RR42_RS04070 at 901.300 kb on - strand, within RR42_RS04070 at 901.300 kb on - strand, within RR42_RS04070 at 901.300 kb on - strand, within RR42_RS04070 at 901.470 kb on - strand at 901.579 kb on + strand at 901.581 kb on + strand at 901.582 kb on - strand at 901.582 kb on - strand at 901.597 kb on + strand at 901.597 kb on + strand at 901.598 kb on - strand at 901.598 kb on - strand at 901.598 kb on - strand at 901.643 kb on + strand at 901.659 kb on + strand at 901.872 kb on + strand at 901.872 kb on + strand at 901.932 kb on + strand at 901.932 kb on + strand at 901.970 kb on + strand at 901.970 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 899,673 + -2.7 899,682 + -0.4 899,717 + -2.2 899,718 - +0.1 899,913 - RR42_RS04065 0.24 -0.1 900,179 + RR42_RS04065 0.55 -0.7 900,180 - RR42_RS04065 0.55 -0.4 900,186 + RR42_RS04065 0.56 +0.4 900,187 + RR42_RS04065 0.56 +0.0 900,480 + -2.6 900,564 + -3.5 900,780 + RR42_RS04070 0.22 -2.5 900,780 + RR42_RS04070 0.22 +0.6 900,780 + RR42_RS04070 0.22 +0.5 900,780 + RR42_RS04070 0.22 +0.7 900,856 - RR42_RS04070 0.29 +2.5 900,856 - RR42_RS04070 0.29 +0.2 900,909 + RR42_RS04070 0.34 -0.3 900,910 - RR42_RS04070 0.35 -0.2 900,939 + RR42_RS04070 0.37 -0.5 900,939 + RR42_RS04070 0.37 -1.4 900,939 + RR42_RS04070 0.37 +0.3 900,939 + RR42_RS04070 0.37 -3.3 900,940 - RR42_RS04070 0.38 +1.4 900,940 - RR42_RS04070 0.38 +2.6 900,940 - RR42_RS04070 0.38 -1.1 900,940 - RR42_RS04070 0.38 -2.5 900,951 + RR42_RS04070 0.39 -0.8 900,952 - RR42_RS04070 0.39 -0.4 900,952 - RR42_RS04070 0.39 -1.1 900,996 + RR42_RS04070 0.43 -2.9 901,172 + RR42_RS04070 0.61 +2.7 901,172 + RR42_RS04070 0.61 +0.7 901,173 - RR42_RS04070 0.61 +0.2 901,173 - RR42_RS04070 0.61 -1.4 901,299 + RR42_RS04070 0.73 +0.3 901,300 - RR42_RS04070 0.73 -2.5 901,300 - RR42_RS04070 0.73 +0.8 901,300 - RR42_RS04070 0.73 +0.2 901,470 - -0.3 901,579 + -1.1 901,581 + +0.9 901,582 - +0.6 901,582 - +0.8 901,597 + +2.3 901,597 + -2.6 901,598 - +0.0 901,598 - +1.9 901,598 - +1.9 901,643 + +0.8 901,659 + -1.0 901,872 + +0.2 901,872 + +0.2 901,932 + -1.5 901,932 + +0.6 901,970 + +1.2 901,970 + +2.2
Or see this region's nucleotide sequence