Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04040 and RR42_RS04045 are separated by 122 nucleotides RR42_RS04045 and RR42_RS04050 are separated by 48 nucleotides
RR42_RS04040: RR42_RS04040 - hypothetical protein, at 896,239 to 896,526
_RS04040
RR42_RS04045: RR42_RS04045 - proline hydroxylase, at 896,649 to 897,257
_RS04045
RR42_RS04050: RR42_RS04050 - Crp/Fnr family transcriptional regulator, at 897,306 to 898,028
_RS04050
Position (kb) 896
897 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 895.273 kb on + strand at 895.276 kb on - strand at 895.276 kb on - strand at 895.552 kb on - strand at 895.828 kb on + strand at 895.828 kb on + strand at 895.828 kb on + strand at 895.842 kb on - strand at 895.871 kb on - strand at 895.894 kb on + strand at 895.895 kb on - strand at 895.936 kb on - strand at 895.936 kb on - strand at 896.070 kb on + strand at 896.070 kb on + strand at 896.070 kb on + strand at 896.071 kb on - strand at 896.071 kb on - strand at 896.080 kb on + strand at 896.080 kb on + strand at 896.080 kb on + strand at 896.139 kb on - strand at 896.139 kb on - strand at 896.139 kb on - strand at 896.196 kb on + strand at 896.196 kb on + strand at 896.196 kb on + strand at 896.197 kb on - strand at 896.197 kb on - strand at 896.197 kb on - strand at 896.198 kb on + strand at 896.198 kb on + strand at 896.198 kb on + strand at 896.202 kb on + strand at 896.202 kb on + strand at 896.203 kb on - strand at 896.203 kb on - strand at 896.203 kb on - strand at 896.203 kb on - strand at 896.203 kb on - strand at 896.203 kb on - strand at 896.269 kb on + strand, within RR42_RS04040 at 896.270 kb on - strand, within RR42_RS04040 at 896.459 kb on - strand, within RR42_RS04040 at 896.459 kb on - strand, within RR42_RS04040 at 896.459 kb on - strand, within RR42_RS04040 at 896.459 kb on - strand, within RR42_RS04040 at 896.500 kb on + strand at 896.501 kb on - strand at 896.561 kb on + strand at 896.561 kb on + strand at 896.561 kb on + strand at 896.995 kb on - strand, within RR42_RS04045 at 896.995 kb on - strand, within RR42_RS04045 at 897.196 kb on + strand, within RR42_RS04045 at 897.196 kb on + strand, within RR42_RS04045 at 897.197 kb on - strand at 897.282 kb on + strand at 897.433 kb on - strand, within RR42_RS04050
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 895,273 + +0.7 895,276 - +0.5 895,276 - +0.5 895,552 - -0.5 895,828 + +0.6 895,828 + -2.1 895,828 + +1.3 895,842 - +2.0 895,871 - -1.9 895,894 + -0.8 895,895 - -0.9 895,936 - -0.2 895,936 - -2.5 896,070 + +0.8 896,070 + +0.1 896,070 + +0.8 896,071 - -1.8 896,071 - +0.5 896,080 + -3.2 896,080 + -2.0 896,080 + +1.3 896,139 - +0.7 896,139 - -0.0 896,139 - -1.0 896,196 + -1.4 896,196 + -3.2 896,196 + +0.7 896,197 - +2.5 896,197 - -0.0 896,197 - -1.8 896,198 + -3.2 896,198 + +0.5 896,198 + -0.1 896,202 + -2.7 896,202 + -2.5 896,203 - +0.1 896,203 - +1.2 896,203 - +0.4 896,203 - -0.3 896,203 - +3.2 896,203 - -2.8 896,269 + RR42_RS04040 0.10 +0.3 896,270 - RR42_RS04040 0.11 -1.7 896,459 - RR42_RS04040 0.76 -4.8 896,459 - RR42_RS04040 0.76 +2.1 896,459 - RR42_RS04040 0.76 -2.5 896,459 - RR42_RS04040 0.76 +1.8 896,500 + +1.2 896,501 - -2.9 896,561 + -4.6 896,561 + +0.9 896,561 + +1.9 896,995 - RR42_RS04045 0.57 +0.2 896,995 - RR42_RS04045 0.57 +0.0 897,196 + RR42_RS04045 0.90 -0.5 897,196 + RR42_RS04045 0.90 -0.8 897,197 - +1.1 897,282 + +0.3 897,433 - RR42_RS04050 0.18 +0.3
Or see this region's nucleotide sequence