Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04020 and RR42_RS04025 are separated by 75 nucleotides RR42_RS04025 and RR42_RS04030 are separated by 448 nucleotides
RR42_RS04020: RR42_RS04020 - serine/threonine protein phosphatase, at 891,910 to 892,791
_RS04020
RR42_RS04025: RR42_RS04025 - cysteine ABC transporter ATP-binding protein, at 892,867 to 893,241
_RS04025
RR42_RS04030: RR42_RS04030 - hypothetical protein, at 893,690 to 894,058
_RS04030
Position (kb) 893
894
895 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 892.852 kb on + strand at 892.853 kb on - strand at 892.853 kb on - strand at 893.007 kb on + strand, within RR42_RS04025 at 893.239 kb on + strand at 893.239 kb on + strand at 893.239 kb on + strand at 893.239 kb on + strand at 893.240 kb on - strand at 893.240 kb on - strand at 893.257 kb on + strand at 893.290 kb on - strand at 893.627 kb on - strand at 893.627 kb on - strand at 893.631 kb on + strand at 893.632 kb on - strand at 893.632 kb on - strand at 893.632 kb on - strand at 893.632 kb on - strand at 893.666 kb on - strand at 893.717 kb on + strand at 893.717 kb on + strand at 893.773 kb on - strand, within RR42_RS04030 at 893.821 kb on + strand, within RR42_RS04030 at 893.824 kb on - strand, within RR42_RS04030 at 893.824 kb on - strand, within RR42_RS04030 at 893.925 kb on + strand, within RR42_RS04030 at 893.926 kb on - strand, within RR42_RS04030 at 894.020 kb on + strand, within RR42_RS04030 at 894.021 kb on - strand, within RR42_RS04030 at 894.024 kb on + strand at 894.024 kb on + strand at 894.024 kb on + strand at 894.024 kb on + strand at 894.058 kb on + strand at 894.058 kb on + strand at 894.064 kb on + strand at 894.087 kb on - strand at 894.336 kb on - strand at 894.336 kb on - strand at 894.364 kb on - strand at 894.365 kb on + strand at 894.365 kb on + strand at 894.366 kb on - strand at 894.366 kb on - strand at 894.366 kb on - strand at 894.366 kb on - strand at 894.366 kb on - strand at 894.366 kb on - strand at 894.440 kb on + strand at 894.479 kb on - strand at 894.817 kb on + strand at 894.880 kb on - strand at 894.990 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 892,852 + -1.9 892,853 - -5.2 892,853 - +2.2 893,007 + RR42_RS04025 0.37 -0.3 893,239 + +1.4 893,239 + -0.3 893,239 + -2.9 893,239 + -0.5 893,240 - +0.9 893,240 - -3.2 893,257 + +1.0 893,290 - -2.4 893,627 - -2.5 893,627 - +1.9 893,631 + +0.7 893,632 - +1.4 893,632 - +0.8 893,632 - +0.7 893,632 - +1.0 893,666 - +1.4 893,717 + -3.3 893,717 + -1.2 893,773 - RR42_RS04030 0.22 +1.4 893,821 + RR42_RS04030 0.36 -0.2 893,824 - RR42_RS04030 0.36 +1.1 893,824 - RR42_RS04030 0.36 -0.2 893,925 + RR42_RS04030 0.64 +0.2 893,926 - RR42_RS04030 0.64 +0.3 894,020 + RR42_RS04030 0.89 -1.5 894,021 - RR42_RS04030 0.90 -0.5 894,024 + +1.2 894,024 + +1.1 894,024 + -1.8 894,024 + +0.6 894,058 + -1.7 894,058 + -2.5 894,064 + +1.0 894,087 - -0.3 894,336 - +0.1 894,336 - +0.1 894,364 - +2.6 894,365 + +1.0 894,365 + -3.2 894,366 - +2.0 894,366 - -1.6 894,366 - +3.2 894,366 - -1.4 894,366 - +0.8 894,366 - -2.0 894,440 + -1.0 894,479 - +1.3 894,817 + +1.1 894,880 - +1.0 894,990 + +0.5
Or see this region's nucleotide sequence