Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03970 and RR42_RS03975 are separated by 7 nucleotides RR42_RS03975 and RR42_RS03980 are separated by 414 nucleotides
RR42_RS03970: RR42_RS03970 - glycosyl transferase family 2, at 876,125 to 876,940
_RS03970
RR42_RS03975: RR42_RS03975 - acetyltransferase, at 876,948 to 877,514
_RS03975
RR42_RS03980: RR42_RS03980 - Fis family transcriptional regulator, at 877,929 to 879,251
_RS03980
Position (kb) 876
877
878 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 876.157 kb on - strand at 876.184 kb on - strand at 876.229 kb on - strand, within RR42_RS03970 at 876.229 kb on - strand, within RR42_RS03970 at 876.393 kb on + strand, within RR42_RS03970 at 876.393 kb on + strand, within RR42_RS03970 at 876.394 kb on - strand, within RR42_RS03970 at 876.394 kb on - strand, within RR42_RS03970 at 876.394 kb on - strand, within RR42_RS03970 at 876.513 kb on + strand, within RR42_RS03970 at 876.546 kb on + strand, within RR42_RS03970 at 876.563 kb on + strand, within RR42_RS03970 at 876.563 kb on + strand, within RR42_RS03970 at 876.563 kb on + strand, within RR42_RS03970 at 876.563 kb on + strand, within RR42_RS03970 at 876.564 kb on - strand, within RR42_RS03970 at 876.696 kb on + strand, within RR42_RS03970 at 876.696 kb on + strand, within RR42_RS03970 at 876.696 kb on + strand, within RR42_RS03970 at 876.696 kb on + strand, within RR42_RS03970 at 876.696 kb on + strand, within RR42_RS03970 at 876.697 kb on - strand, within RR42_RS03970 at 876.697 kb on - strand, within RR42_RS03970 at 876.838 kb on - strand, within RR42_RS03970 at 876.949 kb on + strand at 877.119 kb on + strand, within RR42_RS03975 at 877.119 kb on + strand, within RR42_RS03975 at 877.120 kb on - strand, within RR42_RS03975 at 877.150 kb on - strand, within RR42_RS03975 at 877.174 kb on + strand, within RR42_RS03975 at 877.175 kb on - strand, within RR42_RS03975 at 877.253 kb on - strand, within RR42_RS03975 at 877.331 kb on - strand, within RR42_RS03975 at 877.331 kb on - strand, within RR42_RS03975 at 877.334 kb on + strand, within RR42_RS03975 at 877.334 kb on + strand, within RR42_RS03975 at 877.335 kb on - strand, within RR42_RS03975 at 877.335 kb on - strand, within RR42_RS03975 at 877.335 kb on - strand, within RR42_RS03975 at 877.335 kb on - strand, within RR42_RS03975 at 877.335 kb on - strand, within RR42_RS03975 at 877.829 kb on - strand at 877.892 kb on + strand at 877.892 kb on + strand at 878.338 kb on + strand, within RR42_RS03980 at 878.339 kb on - strand, within RR42_RS03980 at 878.430 kb on - strand, within RR42_RS03980
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 876,157 - -4.1 876,184 - -4.1 876,229 - RR42_RS03970 0.13 -1.1 876,229 - RR42_RS03970 0.13 -1.8 876,393 + RR42_RS03970 0.33 +0.6 876,393 + RR42_RS03970 0.33 -0.5 876,394 - RR42_RS03970 0.33 +2.0 876,394 - RR42_RS03970 0.33 -3.7 876,394 - RR42_RS03970 0.33 -5.2 876,513 + RR42_RS03970 0.48 -1.1 876,546 + RR42_RS03970 0.52 -2.3 876,563 + RR42_RS03970 0.54 -1.7 876,563 + RR42_RS03970 0.54 +0.6 876,563 + RR42_RS03970 0.54 -1.8 876,563 + RR42_RS03970 0.54 -2.5 876,564 - RR42_RS03970 0.54 +0.5 876,696 + RR42_RS03970 0.70 -0.1 876,696 + RR42_RS03970 0.70 +0.4 876,696 + RR42_RS03970 0.70 +0.5 876,696 + RR42_RS03970 0.70 +0.9 876,696 + RR42_RS03970 0.70 -1.3 876,697 - RR42_RS03970 0.70 -3.0 876,697 - RR42_RS03970 0.70 -0.1 876,838 - RR42_RS03970 0.87 +2.4 876,949 + +2.5 877,119 + RR42_RS03975 0.30 -2.1 877,119 + RR42_RS03975 0.30 -3.4 877,120 - RR42_RS03975 0.30 -3.2 877,150 - RR42_RS03975 0.36 +0.3 877,174 + RR42_RS03975 0.40 +0.3 877,175 - RR42_RS03975 0.40 -0.3 877,253 - RR42_RS03975 0.54 -1.2 877,331 - RR42_RS03975 0.68 -3.7 877,331 - RR42_RS03975 0.68 -2.8 877,334 + RR42_RS03975 0.68 +0.5 877,334 + RR42_RS03975 0.68 +2.7 877,335 - RR42_RS03975 0.68 -2.1 877,335 - RR42_RS03975 0.68 -1.3 877,335 - RR42_RS03975 0.68 +0.2 877,335 - RR42_RS03975 0.68 -0.5 877,335 - RR42_RS03975 0.68 +0.9 877,829 - -3.9 877,892 + +1.1 877,892 + -2.7 878,338 + RR42_RS03980 0.31 -1.8 878,339 - RR42_RS03980 0.31 -3.4 878,430 - RR42_RS03980 0.38 -2.8
Or see this region's nucleotide sequence