Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03915 and RR42_RS03920 are separated by 55 nucleotides RR42_RS03920 and RR42_RS03925 are separated by 45 nucleotides
RR42_RS03915: RR42_RS03915 - hypothetical protein, at 862,503 to 864,788
_RS03915
RR42_RS03920: RR42_RS03920 - rubredoxin, at 864,844 to 865,020
_RS03920
RR42_RS03925: RR42_RS03925 - hypothetical protein, at 865,066 to 866,229
_RS03925
Position (kb) 864
865
866 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 863.910 kb on + strand, within RR42_RS03915 at 863.911 kb on - strand, within RR42_RS03915 at 863.913 kb on + strand, within RR42_RS03915 at 864.085 kb on - strand, within RR42_RS03915 at 864.085 kb on - strand, within RR42_RS03915 at 864.165 kb on + strand, within RR42_RS03915 at 864.373 kb on - strand, within RR42_RS03915 at 864.373 kb on - strand, within RR42_RS03915 at 864.382 kb on - strand, within RR42_RS03915 at 864.390 kb on + strand, within RR42_RS03915 at 864.391 kb on - strand, within RR42_RS03915 at 864.391 kb on - strand, within RR42_RS03915 at 864.519 kb on + strand, within RR42_RS03915 at 864.786 kb on + strand at 864.787 kb on - strand at 864.813 kb on + strand at 864.813 kb on + strand at 864.813 kb on + strand at 864.813 kb on + strand at 864.814 kb on - strand at 864.814 kb on - strand at 864.814 kb on - strand at 864.875 kb on + strand, within RR42_RS03920 at 864.876 kb on - strand, within RR42_RS03920 at 864.876 kb on - strand, within RR42_RS03920 at 865.204 kb on + strand, within RR42_RS03925 at 865.676 kb on + strand, within RR42_RS03925 at 865.939 kb on + strand, within RR42_RS03925
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 863,910 + RR42_RS03915 0.62 -2.9 863,911 - RR42_RS03915 0.62 +1.1 863,913 + RR42_RS03915 0.62 +1.4 864,085 - RR42_RS03915 0.69 +0.6 864,085 - RR42_RS03915 0.69 -2.4 864,165 + RR42_RS03915 0.73 +0.4 864,373 - RR42_RS03915 0.82 -3.1 864,373 - RR42_RS03915 0.82 +2.1 864,382 - RR42_RS03915 0.82 -0.6 864,390 + RR42_RS03915 0.83 +2.6 864,391 - RR42_RS03915 0.83 +0.6 864,391 - RR42_RS03915 0.83 -1.8 864,519 + RR42_RS03915 0.88 -2.3 864,786 + +4.9 864,787 - +0.2 864,813 + -1.1 864,813 + -1.0 864,813 + +1.4 864,813 + -1.1 864,814 - +0.6 864,814 - +0.7 864,814 - -0.4 864,875 + RR42_RS03920 0.18 -3.1 864,876 - RR42_RS03920 0.18 -3.1 864,876 - RR42_RS03920 0.18 +0.9 865,204 + RR42_RS03925 0.12 -1.3 865,676 + RR42_RS03925 0.52 +0.5 865,939 + RR42_RS03925 0.75 +2.4
Or see this region's nucleotide sequence