Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03815 and RR42_RS03820 are separated by 125 nucleotides RR42_RS03820 and RR42_RS03825 are separated by 110 nucleotides RR42_RS03825 and RR42_RS03830 are separated by 7 nucleotides RR42_RS03830 and RR42_RS03835 are separated by 6 nucleotides
RR42_RS03815: RR42_RS03815 - short-chain dehydrogenase, at 843,338 to 844,117
_RS03815
RR42_RS03820: RR42_RS03820 - molybdenum cofactor biosynthesis protein MoaA, at 844,243 to 844,485
_RS03820
RR42_RS03825: RR42_RS03825 - ModE family transcriptional regulator, at 844,596 to 845,399
_RS03825
RR42_RS03830: RR42_RS03830 - molybdenum ABC transporter ATPase, at 845,407 to 846,129
_RS03830
RR42_RS03835: RR42_RS03835 - molybdate ABC transporter permease, at 846,136 to 846,807
_RS03835
Position (kb) 844
845
846 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 843.786 kb on - strand, within RR42_RS03815 at 843.815 kb on + strand, within RR42_RS03815 at 843.864 kb on - strand, within RR42_RS03815 at 844.040 kb on + strand at 844.085 kb on + strand at 844.085 kb on + strand at 844.086 kb on - strand at 844.174 kb on - strand at 844.183 kb on + strand at 844.183 kb on + strand at 844.184 kb on - strand at 844.229 kb on - strand at 844.313 kb on - strand, within RR42_RS03820 at 844.313 kb on - strand, within RR42_RS03820 at 844.387 kb on - strand, within RR42_RS03820 at 844.462 kb on + strand at 844.463 kb on - strand at 844.463 kb on - strand at 844.463 kb on - strand at 844.463 kb on - strand at 844.463 kb on - strand at 844.540 kb on - strand at 844.540 kb on - strand at 844.545 kb on - strand at 844.545 kb on - strand at 844.600 kb on + strand at 844.601 kb on - strand at 844.601 kb on - strand at 844.732 kb on - strand, within RR42_RS03825 at 844.864 kb on - strand, within RR42_RS03825 at 845.078 kb on - strand, within RR42_RS03825 at 845.436 kb on - strand at 845.599 kb on + strand, within RR42_RS03830 at 845.864 kb on + strand, within RR42_RS03830 at 845.879 kb on + strand, within RR42_RS03830 at 845.880 kb on - strand, within RR42_RS03830 at 845.880 kb on - strand, within RR42_RS03830 at 846.110 kb on - strand at 846.110 kb on - strand at 846.137 kb on + strand at 846.263 kb on + strand, within RR42_RS03835 at 846.263 kb on + strand, within RR42_RS03835 at 846.264 kb on - strand, within RR42_RS03835 at 846.264 kb on - strand, within RR42_RS03835
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 843,786 - RR42_RS03815 0.57 -3.0 843,815 + RR42_RS03815 0.61 +3.1 843,864 - RR42_RS03815 0.67 +2.5 844,040 + -2.0 844,085 + +0.2 844,085 + -3.5 844,086 - -1.1 844,174 - +0.0 844,183 + +1.1 844,183 + +0.5 844,184 - +1.0 844,229 - -1.4 844,313 - RR42_RS03820 0.29 +1.0 844,313 - RR42_RS03820 0.29 -0.9 844,387 - RR42_RS03820 0.59 +1.2 844,462 + -0.3 844,463 - -2.4 844,463 - +1.5 844,463 - +0.5 844,463 - -2.8 844,463 - +0.1 844,540 - +1.4 844,540 - -0.1 844,545 - -3.8 844,545 - +1.5 844,600 + -0.1 844,601 - +1.2 844,601 - +0.2 844,732 - RR42_RS03825 0.17 -0.3 844,864 - RR42_RS03825 0.33 +1.2 845,078 - RR42_RS03825 0.60 +1.1 845,436 - +1.4 845,599 + RR42_RS03830 0.27 +0.2 845,864 + RR42_RS03830 0.63 +0.2 845,879 + RR42_RS03830 0.65 +0.3 845,880 - RR42_RS03830 0.65 -2.7 845,880 - RR42_RS03830 0.65 +0.8 846,110 - -0.6 846,110 - +1.0 846,137 + -0.7 846,263 + RR42_RS03835 0.19 -2.5 846,263 + RR42_RS03835 0.19 +0.3 846,264 - RR42_RS03835 0.19 -2.4 846,264 - RR42_RS03835 0.19 +0.8
Or see this region's nucleotide sequence