Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03760

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03755 and RR42_RS03760 are separated by 88 nucleotidesRR42_RS03760 and RR42_RS03765 are separated by 2 nucleotidesRR42_RS03765 and RR42_RS03770 overlap by 4 nucleotides RR42_RS03755: RR42_RS03755 - formate dehydrogenase, at 827,821 to 829,374 _RS03755 RR42_RS03760: RR42_RS03760 - formate dehydrogenase, at 829,463 to 832,318 _RS03760 RR42_RS03765: RR42_RS03765 - formate dehydrogenase, at 832,321 to 833,160 _RS03765 RR42_RS03770: RR42_RS03770 - formate dehydrogenase, at 833,157 to 833,381 _RS03770 Position (kb) 829 830 831 832 833Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 828.475 kb on + strand, within RR42_RS03755at 828.475 kb on + strand, within RR42_RS03755at 828.476 kb on - strand, within RR42_RS03755at 828.476 kb on - strand, within RR42_RS03755at 828.477 kb on + strand, within RR42_RS03755at 828.477 kb on + strand, within RR42_RS03755at 828.477 kb on + strand, within RR42_RS03755at 828.477 kb on + strand, within RR42_RS03755at 828.477 kb on + strand, within RR42_RS03755at 828.478 kb on - strand, within RR42_RS03755at 828.481 kb on + strand, within RR42_RS03755at 828.481 kb on + strand, within RR42_RS03755at 828.481 kb on + strand, within RR42_RS03755at 828.497 kb on - strand, within RR42_RS03755at 828.622 kb on + strand, within RR42_RS03755at 828.622 kb on + strand, within RR42_RS03755at 828.797 kb on - strand, within RR42_RS03755at 828.797 kb on - strand, within RR42_RS03755at 829.433 kb on - strandat 829.784 kb on + strand, within RR42_RS03760at 829.784 kb on + strand, within RR42_RS03760at 829.785 kb on - strand, within RR42_RS03760at 829.785 kb on - strand, within RR42_RS03760at 829.785 kb on - strand, within RR42_RS03760at 829.786 kb on + strand, within RR42_RS03760at 829.787 kb on - strand, within RR42_RS03760at 829.787 kb on - strand, within RR42_RS03760at 829.883 kb on + strand, within RR42_RS03760at 829.938 kb on - strand, within RR42_RS03760at 829.946 kb on + strand, within RR42_RS03760at 829.946 kb on + strand, within RR42_RS03760at 829.946 kb on + strand, within RR42_RS03760at 829.947 kb on - strand, within RR42_RS03760at 830.265 kb on - strand, within RR42_RS03760at 830.324 kb on + strand, within RR42_RS03760at 830.511 kb on - strand, within RR42_RS03760at 830.561 kb on - strand, within RR42_RS03760at 831.036 kb on - strand, within RR42_RS03760at 831.062 kb on + strand, within RR42_RS03760at 831.063 kb on - strand, within RR42_RS03760at 831.335 kb on - strand, within RR42_RS03760at 831.374 kb on + strand, within RR42_RS03760at 831.374 kb on + strand, within RR42_RS03760at 831.491 kb on + strand, within RR42_RS03760at 831.501 kb on + strand, within RR42_RS03760at 831.501 kb on + strand, within RR42_RS03760at 831.659 kb on + strand, within RR42_RS03760at 831.848 kb on + strand, within RR42_RS03760at 831.920 kb on + strand, within RR42_RS03760at 831.920 kb on + strand, within RR42_RS03760at 832.110 kb on - strandat 832.190 kb on + strandat 832.190 kb on + strandat 832.191 kb on - strandat 832.191 kb on - strandat 832.450 kb on + strand, within RR42_RS03765at 832.450 kb on + strand, within RR42_RS03765at 832.559 kb on - strand, within RR42_RS03765at 832.762 kb on + strand, within RR42_RS03765at 832.975 kb on + strand, within RR42_RS03765at 833.051 kb on + strand, within RR42_RS03765at 833.116 kb on + strandat 833.116 kb on + strandat 833.256 kb on - strand, within RR42_RS03770

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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828,475 + RR42_RS03755 0.42 +0.3
828,475 + RR42_RS03755 0.42 +1.8
828,476 - RR42_RS03755 0.42 -1.3
828,476 - RR42_RS03755 0.42 -0.8
828,477 + RR42_RS03755 0.42 +0.3
828,477 + RR42_RS03755 0.42 +0.2
828,477 + RR42_RS03755 0.42 +0.4
828,477 + RR42_RS03755 0.42 +2.2
828,477 + RR42_RS03755 0.42 -3.5
828,478 - RR42_RS03755 0.42 +0.7
828,481 + RR42_RS03755 0.42 +0.5
828,481 + RR42_RS03755 0.42 +1.1
828,481 + RR42_RS03755 0.42 +2.4
828,497 - RR42_RS03755 0.44 +1.9
828,622 + RR42_RS03755 0.52 -2.8
828,622 + RR42_RS03755 0.52 +4.0
828,797 - RR42_RS03755 0.63 -0.8
828,797 - RR42_RS03755 0.63 -0.0
829,433 - -1.8
829,784 + RR42_RS03760 0.11 -2.1
829,784 + RR42_RS03760 0.11 -1.3
829,785 - RR42_RS03760 0.11 +1.2
829,785 - RR42_RS03760 0.11 +1.8
829,785 - RR42_RS03760 0.11 +2.0
829,786 + RR42_RS03760 0.11 -0.9
829,787 - RR42_RS03760 0.11 -0.1
829,787 - RR42_RS03760 0.11 +0.3
829,883 + RR42_RS03760 0.15 -0.1
829,938 - RR42_RS03760 0.17 -2.2
829,946 + RR42_RS03760 0.17 -0.3
829,946 + RR42_RS03760 0.17 +1.1
829,946 + RR42_RS03760 0.17 -2.4
829,947 - RR42_RS03760 0.17 +0.4
830,265 - RR42_RS03760 0.28 -0.4
830,324 + RR42_RS03760 0.30 -1.0
830,511 - RR42_RS03760 0.37 -1.1
830,561 - RR42_RS03760 0.38 -0.1
831,036 - RR42_RS03760 0.55 -0.5
831,062 + RR42_RS03760 0.56 +0.6
831,063 - RR42_RS03760 0.56 -0.3
831,335 - RR42_RS03760 0.66 -1.3
831,374 + RR42_RS03760 0.67 +0.1
831,374 + RR42_RS03760 0.67 +1.1
831,491 + RR42_RS03760 0.71 -3.3
831,501 + RR42_RS03760 0.71 -3.0
831,501 + RR42_RS03760 0.71 -4.6
831,659 + RR42_RS03760 0.77 -2.0
831,848 + RR42_RS03760 0.84 -0.0
831,920 + RR42_RS03760 0.86 -1.1
831,920 + RR42_RS03760 0.86 -0.0
832,110 - +2.0
832,190 + -0.6
832,190 + +0.0
832,191 - +1.1
832,191 - -0.9
832,450 + RR42_RS03765 0.15 -3.6
832,450 + RR42_RS03765 0.15 +1.6
832,559 - RR42_RS03765 0.28 -3.3
832,762 + RR42_RS03765 0.53 +1.3
832,975 + RR42_RS03765 0.78 -0.2
833,051 + RR42_RS03765 0.87 +2.0
833,116 + -0.6
833,116 + -0.2
833,256 - RR42_RS03770 0.44 -2.3

Or see this region's nucleotide sequence