Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03660

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS03650 and RR42_RS03655 are separated by 215 nucleotidesRR42_RS03655 and RR42_RS03660 are separated by 66 nucleotidesRR42_RS03660 and RR42_RS03665 are separated by 80 nucleotidesRR42_RS03665 and RR42_RS03670 are separated by 74 nucleotides RR42_RS03650: RR42_RS03650 - hypothetical protein, at 811,047 to 811,331 _RS03650 RR42_RS03655: RR42_RS03655 - hypothetical protein, at 811,547 to 811,921 _RS03655 RR42_RS03660: RR42_RS03660 - translation initiation factor 1, at 811,988 to 812,242 _RS03660 RR42_RS03665: RR42_RS03665 - translation initiation factor IF-1, at 812,323 to 812,544 _RS03665 RR42_RS03670: RR42_RS03670 - isochorismatase, at 812,619 to 812,813 _RS03670 Position (kb) 811 812 813Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 811.055 kb on + strandat 811.056 kb on - strandat 811.071 kb on + strandat 811.072 kb on - strandat 811.072 kb on - strandat 811.072 kb on - strandat 811.072 kb on - strandat 811.286 kb on + strand, within RR42_RS03650at 811.287 kb on - strand, within RR42_RS03650at 811.287 kb on - strand, within RR42_RS03650at 811.290 kb on - strand, within RR42_RS03650at 811.292 kb on + strand, within RR42_RS03650at 811.329 kb on + strandat 811.330 kb on - strandat 811.330 kb on - strandat 811.359 kb on - strandat 811.415 kb on - strandat 811.495 kb on - strandat 811.541 kb on + strandat 811.542 kb on - strandat 811.542 kb on - strandat 811.542 kb on - strandat 811.542 kb on - strandat 811.542 kb on - strandat 811.614 kb on - strand, within RR42_RS03655at 811.620 kb on + strand, within RR42_RS03655at 811.620 kb on + strand, within RR42_RS03655at 811.620 kb on + strand, within RR42_RS03655at 811.621 kb on - strand, within RR42_RS03655at 811.621 kb on - strand, within RR42_RS03655at 811.621 kb on - strand, within RR42_RS03655at 811.799 kb on + strand, within RR42_RS03655at 811.800 kb on - strand, within RR42_RS03655at 811.823 kb on + strand, within RR42_RS03655at 811.824 kb on - strand, within RR42_RS03655at 811.989 kb on + strandat 811.990 kb on - strandat 812.094 kb on + strand, within RR42_RS03660at 812.095 kb on - strand, within RR42_RS03660at 812.105 kb on + strand, within RR42_RS03660at 812.105 kb on + strand, within RR42_RS03660at 812.105 kb on + strand, within RR42_RS03660at 812.106 kb on - strand, within RR42_RS03660at 812.106 kb on - strand, within RR42_RS03660at 812.106 kb on - strand, within RR42_RS03660at 812.106 kb on - strand, within RR42_RS03660at 812.122 kb on + strand, within RR42_RS03660at 812.123 kb on - strand, within RR42_RS03660at 812.189 kb on + strand, within RR42_RS03660at 812.301 kb on + strandat 812.322 kb on - strandat 812.327 kb on + strandat 812.328 kb on - strandat 812.328 kb on - strandat 812.367 kb on - strand, within RR42_RS03665at 812.441 kb on + strand, within RR42_RS03665at 812.498 kb on - strand, within RR42_RS03665at 812.527 kb on + strandat 812.539 kb on - strandat 812.676 kb on - strand, within RR42_RS03670at 812.764 kb on + strand, within RR42_RS03670at 812.765 kb on - strand, within RR42_RS03670at 812.796 kb on + strandat 812.797 kb on - strandat 812.818 kb on + strandat 812.818 kb on + strandat 812.850 kb on - strandat 812.858 kb on + strandat 812.859 kb on - strandat 813.017 kb on + strandat 813.017 kb on + strandat 813.063 kb on + strandat 813.064 kb on - strandat 813.167 kb on + strandat 813.168 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
811,055 + +0.2
811,056 - -1.5
811,071 + +1.6
811,072 - +0.4
811,072 - -1.0
811,072 - -3.0
811,072 - -2.5
811,286 + RR42_RS03650 0.84 +0.3
811,287 - RR42_RS03650 0.84 +1.0
811,287 - RR42_RS03650 0.84 +2.6
811,290 - RR42_RS03650 0.85 +0.1
811,292 + RR42_RS03650 0.86 -2.4
811,329 + -1.3
811,330 - +1.3
811,330 - -1.2
811,359 - +0.4
811,415 - -2.0
811,495 - +0.4
811,541 + -0.4
811,542 - -0.8
811,542 - -2.3
811,542 - -3.7
811,542 - -1.5
811,542 - -0.5
811,614 - RR42_RS03655 0.18 -1.1
811,620 + RR42_RS03655 0.19 +0.3
811,620 + RR42_RS03655 0.19 -2.1
811,620 + RR42_RS03655 0.19 +0.6
811,621 - RR42_RS03655 0.20 +1.0
811,621 - RR42_RS03655 0.20 +2.9
811,621 - RR42_RS03655 0.20 -2.4
811,799 + RR42_RS03655 0.67 +1.0
811,800 - RR42_RS03655 0.67 +1.0
811,823 + RR42_RS03655 0.74 +1.2
811,824 - RR42_RS03655 0.74 +0.4
811,989 + +0.9
811,990 - +2.3
812,094 + RR42_RS03660 0.42 -0.8
812,095 - RR42_RS03660 0.42 -2.7
812,105 + RR42_RS03660 0.46 +1.3
812,105 + RR42_RS03660 0.46 +0.0
812,105 + RR42_RS03660 0.46 -2.5
812,106 - RR42_RS03660 0.46 +0.4
812,106 - RR42_RS03660 0.46 -0.1
812,106 - RR42_RS03660 0.46 -2.0
812,106 - RR42_RS03660 0.46 +0.7
812,122 + RR42_RS03660 0.53 -1.0
812,123 - RR42_RS03660 0.53 +2.5
812,189 + RR42_RS03660 0.79 -3.4
812,301 + -3.0
812,322 - -1.0
812,327 + +1.6
812,328 - -1.6
812,328 - -2.0
812,367 - RR42_RS03665 0.20 +0.2
812,441 + RR42_RS03665 0.53 -3.2
812,498 - RR42_RS03665 0.79 +1.7
812,527 + -0.3
812,539 - +1.0
812,676 - RR42_RS03670 0.29 -1.1
812,764 + RR42_RS03670 0.74 +2.3
812,765 - RR42_RS03670 0.75 -2.4
812,796 + -1.8
812,797 - -1.2
812,818 + +0.6
812,818 + +0.4
812,850 - +0.3
812,858 + -1.8
812,859 - +0.1
813,017 + +0.1
813,017 + -0.9
813,063 + +1.1
813,064 - +0.9
813,167 + +0.7
813,168 - -4.8

Or see this region's nucleotide sequence