Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03455

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03450 and RR42_RS03455 are separated by 12 nucleotidesRR42_RS03455 and RR42_RS03460 overlap by 20 nucleotides RR42_RS03450: RR42_RS03450 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 766,793 to 767,602 _RS03450 RR42_RS03455: RR42_RS03455 - hypothetical protein, at 767,615 to 767,803 _RS03455 RR42_RS03460: RR42_RS03460 - tetraacyldisaccharide 4'-kinase, at 767,784 to 768,893 _RS03460 Position (kb) 767 768Strain fitness (log2 ratio) -3 -2 -1 0 1at 766.671 kb on - strandat 766.671 kb on - strandat 766.671 kb on - strandat 766.684 kb on - strandat 766.739 kb on + strandat 766.739 kb on + strandat 766.739 kb on + strandat 766.739 kb on + strandat 766.740 kb on - strandat 766.740 kb on - strandat 766.747 kb on - strandat 766.747 kb on - strandat 766.753 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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766,671 - +1.0
766,671 - +1.7
766,671 - -1.5
766,684 - -2.9
766,739 + -1.8
766,739 + -2.6
766,739 + -2.4
766,739 + -1.0
766,740 - +1.6
766,740 - -0.4
766,747 - +0.6
766,747 - +1.0
766,753 + +0.9

Or see this region's nucleotide sequence