Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03445 and RR42_RS03450 are separated by 360 nucleotides RR42_RS03450 and RR42_RS03455 are separated by 12 nucleotides RR42_RS03455 and RR42_RS03460 overlap by 20 nucleotides
RR42_RS03445: RR42_RS03445 - adenylate kinase, at 765,767 to 766,432
_RS03445
RR42_RS03450: RR42_RS03450 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 766,793 to 767,602
_RS03450
RR42_RS03455: RR42_RS03455 - hypothetical protein, at 767,615 to 767,803
_RS03455
RR42_RS03460: RR42_RS03460 - tetraacyldisaccharide 4'-kinase, at 767,784 to 768,893
_RS03460
Position (kb) 766
767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.671 kb on - strand at 766.671 kb on - strand at 766.671 kb on - strand at 766.684 kb on - strand at 766.739 kb on + strand at 766.739 kb on + strand at 766.739 kb on + strand at 766.739 kb on + strand at 766.740 kb on - strand at 766.740 kb on - strand at 766.747 kb on - strand at 766.747 kb on - strand at 766.753 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 766,461 - -1.4 766,461 - +0.3 766,461 - +1.2 766,461 - +0.7 766,461 - +1.8 766,461 - -0.3 766,461 - -1.9 766,461 - -0.3 766,671 - +1.0 766,671 - +1.7 766,671 - -1.5 766,684 - -2.9 766,739 + -1.8 766,739 + -2.6 766,739 + -2.4 766,739 + -1.0 766,740 - +1.6 766,740 - -0.4 766,747 - +0.6 766,747 - +1.0 766,753 + +0.9
Or see this region's nucleotide sequence