Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03435 and RR42_RS03440 are separated by 27 nucleotides RR42_RS03440 and RR42_RS03445 are separated by 179 nucleotides RR42_RS03445 and RR42_RS03450 are separated by 360 nucleotides
RR42_RS03435: RR42_RS03435 - XRE family transcriptional regulator, at 763,992 to 764,801
_RS03435
RR42_RS03440: RR42_RS03440 - 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 764,829 to 765,587
_RS03440
RR42_RS03445: RR42_RS03445 - adenylate kinase, at 765,767 to 766,432
_RS03445
RR42_RS03450: RR42_RS03450 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 766,793 to 767,602
_RS03450
Position (kb) 765
766
767 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 764.831 kb on - strand at 765.115 kb on + strand, within RR42_RS03440 at 765.161 kb on + strand, within RR42_RS03440 at 765.161 kb on + strand, within RR42_RS03440 at 765.161 kb on + strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.162 kb on - strand, within RR42_RS03440 at 765.563 kb on + strand at 765.563 kb on + strand at 765.564 kb on - strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.567 kb on + strand at 765.568 kb on - strand at 765.568 kb on - strand at 765.568 kb on - strand at 765.568 kb on - strand at 765.568 kb on - strand at 765.568 kb on - strand at 765.641 kb on - strand at 765.769 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.461 kb on - strand at 766.671 kb on - strand at 766.671 kb on - strand at 766.671 kb on - strand at 766.684 kb on - strand at 766.739 kb on + strand at 766.739 kb on + strand at 766.739 kb on + strand at 766.739 kb on + strand at 766.740 kb on - strand at 766.740 kb on - strand at 766.747 kb on - strand at 766.747 kb on - strand at 766.753 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 764,831 - +0.3 765,115 + RR42_RS03440 0.38 -1.3 765,161 + RR42_RS03440 0.44 -0.1 765,161 + RR42_RS03440 0.44 -4.4 765,161 + RR42_RS03440 0.44 +1.2 765,162 - RR42_RS03440 0.44 -4.9 765,162 - RR42_RS03440 0.44 -0.2 765,162 - RR42_RS03440 0.44 +0.5 765,162 - RR42_RS03440 0.44 +0.4 765,162 - RR42_RS03440 0.44 -3.1 765,162 - RR42_RS03440 0.44 -2.5 765,162 - RR42_RS03440 0.44 -1.6 765,563 + -1.5 765,563 + +1.0 765,564 - +1.1 765,567 + -0.4 765,567 + -1.5 765,567 + +0.2 765,567 + +0.6 765,567 + -0.2 765,567 + -0.3 765,567 + -2.8 765,567 + +1.3 765,567 + -3.9 765,568 - +2.1 765,568 - +1.6 765,568 - +1.4 765,568 - +1.3 765,568 - +1.4 765,568 - +0.9 765,641 - -1.6 765,769 - -0.4 766,461 - -1.4 766,461 - +0.3 766,461 - +1.2 766,461 - +0.7 766,461 - +1.8 766,461 - -0.3 766,461 - -1.9 766,461 - -0.3 766,671 - +1.0 766,671 - +1.7 766,671 - -1.5 766,684 - -2.9 766,739 + -1.8 766,739 + -2.6 766,739 + -2.4 766,739 + -1.0 766,740 - +1.6 766,740 - -0.4 766,747 - +0.6 766,747 - +1.0 766,753 + +0.9
Or see this region's nucleotide sequence