Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03420

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03415 and RR42_RS03420 are separated by 70 nucleotidesRR42_RS03420 and RR42_RS03425 are separated by 95 nucleotides RR42_RS03415: RR42_RS03415 - N-acetylmuramoyl-L-alanine amidase, at 759,332 to 760,837 _RS03415 RR42_RS03420: RR42_RS03420 - bile acid:sodium symporter, at 760,908 to 761,930 _RS03420 RR42_RS03425: RR42_RS03425 - LysR family transcriptional regulator, at 762,026 to 762,934 _RS03425 Position (kb) 760 761 762Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 760.268 kb on - strand, within RR42_RS03415at 760.268 kb on - strand, within RR42_RS03415at 760.318 kb on - strand, within RR42_RS03415at 760.793 kb on + strandat 760.793 kb on + strandat 760.794 kb on - strandat 760.794 kb on - strandat 760.836 kb on - strandat 760.999 kb on + strandat 761.000 kb on - strandat 761.227 kb on + strand, within RR42_RS03420at 761.227 kb on + strand, within RR42_RS03420at 761.228 kb on - strand, within RR42_RS03420at 761.228 kb on - strand, within RR42_RS03420at 761.228 kb on - strand, within RR42_RS03420at 761.272 kb on + strand, within RR42_RS03420at 761.273 kb on - strand, within RR42_RS03420at 761.273 kb on - strand, within RR42_RS03420at 761.426 kb on + strand, within RR42_RS03420at 761.426 kb on + strand, within RR42_RS03420at 761.427 kb on - strand, within RR42_RS03420at 761.590 kb on + strand, within RR42_RS03420at 761.590 kb on + strand, within RR42_RS03420at 761.590 kb on + strand, within RR42_RS03420at 761.591 kb on - strand, within RR42_RS03420at 761.591 kb on - strand, within RR42_RS03420at 761.591 kb on - strand, within RR42_RS03420at 761.591 kb on - strand, within RR42_RS03420at 761.591 kb on - strand, within RR42_RS03420at 761.674 kb on + strand, within RR42_RS03420at 761.674 kb on + strand, within RR42_RS03420at 761.674 kb on + strand, within RR42_RS03420at 761.674 kb on + strand, within RR42_RS03420at 761.674 kb on + strand, within RR42_RS03420at 761.675 kb on - strand, within RR42_RS03420at 761.675 kb on - strand, within RR42_RS03420at 761.675 kb on - strand, within RR42_RS03420at 761.675 kb on - strand, within RR42_RS03420at 761.874 kb on + strandat 761.874 kb on + strandat 761.874 kb on + strandat 761.874 kb on + strandat 761.875 kb on - strandat 761.946 kb on + strandat 761.963 kb on - strandat 762.033 kb on - strandat 762.296 kb on + strand, within RR42_RS03425at 762.356 kb on + strand, within RR42_RS03425at 762.356 kb on + strand, within RR42_RS03425at 762.356 kb on + strand, within RR42_RS03425at 762.356 kb on + strand, within RR42_RS03425at 762.356 kb on + strand, within RR42_RS03425at 762.356 kb on + strand, within RR42_RS03425at 762.357 kb on - strand, within RR42_RS03425at 762.357 kb on - strand, within RR42_RS03425at 762.357 kb on - strand, within RR42_RS03425at 762.357 kb on - strand, within RR42_RS03425at 762.357 kb on - strand, within RR42_RS03425at 762.357 kb on - strand, within RR42_RS03425at 762.357 kb on - strand, within RR42_RS03425at 762.357 kb on - strand, within RR42_RS03425at 762.357 kb on - strand, within RR42_RS03425at 762.465 kb on + strand, within RR42_RS03425at 762.465 kb on + strand, within RR42_RS03425at 762.466 kb on - strand, within RR42_RS03425at 762.597 kb on + strand, within RR42_RS03425at 762.597 kb on + strand, within RR42_RS03425at 762.598 kb on - strand, within RR42_RS03425at 762.891 kb on + strandat 762.891 kb on + strandat 762.891 kb on + strandat 762.892 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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760,268 - RR42_RS03415 0.62 -4.4
760,268 - RR42_RS03415 0.62 -3.4
760,318 - RR42_RS03415 0.65 -3.2
760,793 + -0.9
760,793 + -1.6
760,794 - -1.1
760,794 - +0.5
760,836 - -0.1
760,999 + -0.9
761,000 - +1.5
761,227 + RR42_RS03420 0.31 -1.1
761,227 + RR42_RS03420 0.31 -2.4
761,228 - RR42_RS03420 0.31 -0.2
761,228 - RR42_RS03420 0.31 +1.4
761,228 - RR42_RS03420 0.31 -0.8
761,272 + RR42_RS03420 0.36 +1.4
761,273 - RR42_RS03420 0.36 -0.7
761,273 - RR42_RS03420 0.36 +0.5
761,426 + RR42_RS03420 0.51 +0.6
761,426 + RR42_RS03420 0.51 +0.0
761,427 - RR42_RS03420 0.51 -4.3
761,590 + RR42_RS03420 0.67 -4.3
761,590 + RR42_RS03420 0.67 -3.4
761,590 + RR42_RS03420 0.67 -1.1
761,591 - RR42_RS03420 0.67 +1.0
761,591 - RR42_RS03420 0.67 -1.4
761,591 - RR42_RS03420 0.67 -1.0
761,591 - RR42_RS03420 0.67 -3.8
761,591 - RR42_RS03420 0.67 -3.0
761,674 + RR42_RS03420 0.75 +0.9
761,674 + RR42_RS03420 0.75 -0.6
761,674 + RR42_RS03420 0.75 +1.2
761,674 + RR42_RS03420 0.75 -2.1
761,674 + RR42_RS03420 0.75 -0.4
761,675 - RR42_RS03420 0.75 +0.8
761,675 - RR42_RS03420 0.75 -2.4
761,675 - RR42_RS03420 0.75 -1.9
761,675 - RR42_RS03420 0.75 +0.9
761,874 + +0.5
761,874 + -0.8
761,874 + +1.0
761,874 + -2.3
761,875 - -3.6
761,946 + +1.5
761,963 - -0.3
762,033 - +0.5
762,296 + RR42_RS03425 0.30 -1.4
762,356 + RR42_RS03425 0.36 -2.3
762,356 + RR42_RS03425 0.36 +1.2
762,356 + RR42_RS03425 0.36 +0.2
762,356 + RR42_RS03425 0.36 -0.5
762,356 + RR42_RS03425 0.36 -2.0
762,356 + RR42_RS03425 0.36 +0.7
762,357 - RR42_RS03425 0.36 +1.5
762,357 - RR42_RS03425 0.36 +0.8
762,357 - RR42_RS03425 0.36 +1.4
762,357 - RR42_RS03425 0.36 -2.5
762,357 - RR42_RS03425 0.36 +0.2
762,357 - RR42_RS03425 0.36 -2.9
762,357 - RR42_RS03425 0.36 +0.7
762,357 - RR42_RS03425 0.36 -0.6
762,357 - RR42_RS03425 0.36 +1.0
762,465 + RR42_RS03425 0.48 +0.7
762,465 + RR42_RS03425 0.48 -0.0
762,466 - RR42_RS03425 0.48 +1.3
762,597 + RR42_RS03425 0.63 -3.2
762,597 + RR42_RS03425 0.63 -0.3
762,598 - RR42_RS03425 0.63 -0.6
762,891 + -1.6
762,891 + +0.5
762,891 + +2.0
762,892 - +1.8

Or see this region's nucleotide sequence