Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03365

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS03360 and RR42_RS03365 are separated by 103 nucleotidesRR42_RS03365 and RR42_RS03370 are separated by 39 nucleotides RR42_RS03360: RR42_RS03360 - fructose ABC transporter, ATPase component (FrcA) (from data), at 746,637 to 748,250 _RS03360 RR42_RS03365: RR42_RS03365 - fructose ABC transporter, permease component (FrcC) (from data), at 748,354 to 749,355 _RS03365 RR42_RS03370: RR42_RS03370 - fructose ABC transporter, substrate-binding component (FrcB) (from data), at 749,395 to 750,372 _RS03370 Position (kb) 748 749 750Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 747.390 kb on + strand, within RR42_RS03360at 747.390 kb on + strand, within RR42_RS03360at 747.390 kb on + strand, within RR42_RS03360at 747.675 kb on + strand, within RR42_RS03360at 748.467 kb on - strand, within RR42_RS03365at 748.875 kb on - strand, within RR42_RS03365at 748.967 kb on - strand, within RR42_RS03365at 749.038 kb on + strand, within RR42_RS03365at 749.039 kb on - strand, within RR42_RS03365at 749.095 kb on + strand, within RR42_RS03365at 749.129 kb on - strand, within RR42_RS03365at 749.278 kb on + strandat 749.278 kb on + strandat 749.278 kb on + strandat 749.554 kb on + strand, within RR42_RS03370at 749.671 kb on - strand, within RR42_RS03370at 750.040 kb on + strand, within RR42_RS03370at 750.346 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
747,390 + RR42_RS03360 0.47 -1.3
747,390 + RR42_RS03360 0.47 +1.1
747,390 + RR42_RS03360 0.47 -1.4
747,675 + RR42_RS03360 0.64 +0.2
748,467 - RR42_RS03365 0.11 +3.0
748,875 - RR42_RS03365 0.52 +1.6
748,967 - RR42_RS03365 0.61 +0.5
749,038 + RR42_RS03365 0.68 -4.0
749,039 - RR42_RS03365 0.68 -2.0
749,095 + RR42_RS03365 0.74 +2.2
749,129 - RR42_RS03365 0.77 +1.1
749,278 + -0.4
749,278 + -0.2
749,278 + -2.4
749,554 + RR42_RS03370 0.16 +0.9
749,671 - RR42_RS03370 0.28 +0.5
750,040 + RR42_RS03370 0.66 +1.1
750,346 + +0.6

Or see this region's nucleotide sequence