Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03265 and RR42_RS03270 are separated by 354 nucleotides RR42_RS03270 and RR42_RS03275 are separated by 94 nucleotides RR42_RS03275 and RR42_RS03280 are separated by 117 nucleotides
RR42_RS03265: RR42_RS03265 - hypothetical protein, at 723,233 to 724,513
_RS03265
RR42_RS03270: RR42_RS03270 - membrane protein, at 724,868 to 725,077
_RS03270
RR42_RS03275: RR42_RS03275 - membrane protein, at 725,172 to 725,642
_RS03275
RR42_RS03280: RR42_RS03280 - LysR family transcriptional regulator, at 725,760 to 726,665
_RS03280
Position (kb) 724
725
726 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 723.918 kb on + strand, within RR42_RS03265 at 723.918 kb on + strand, within RR42_RS03265 at 723.919 kb on - strand, within RR42_RS03265 at 723.988 kb on - strand, within RR42_RS03265 at 724.138 kb on + strand, within RR42_RS03265 at 724.139 kb on - strand, within RR42_RS03265 at 724.293 kb on + strand, within RR42_RS03265 at 724.293 kb on + strand, within RR42_RS03265 at 724.293 kb on + strand, within RR42_RS03265 at 724.294 kb on - strand, within RR42_RS03265 at 724.294 kb on - strand, within RR42_RS03265 at 724.294 kb on - strand, within RR42_RS03265 at 724.297 kb on - strand, within RR42_RS03265 at 724.442 kb on + strand at 724.442 kb on + strand at 724.442 kb on + strand at 724.755 kb on + strand at 724.755 kb on + strand at 724.756 kb on - strand at 724.756 kb on - strand at 724.756 kb on - strand at 724.764 kb on + strand at 724.764 kb on + strand at 724.765 kb on - strand at 724.765 kb on - strand at 724.765 kb on - strand at 724.765 kb on - strand at 724.874 kb on - strand at 724.879 kb on - strand at 724.888 kb on + strand at 724.888 kb on + strand at 725.166 kb on + strand at 725.166 kb on + strand at 725.167 kb on - strand at 725.167 kb on - strand at 725.167 kb on - strand at 725.167 kb on - strand at 725.187 kb on + strand at 725.281 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.290 kb on + strand, within RR42_RS03275 at 725.291 kb on - strand, within RR42_RS03275 at 725.291 kb on - strand, within RR42_RS03275 at 725.291 kb on - strand, within RR42_RS03275 at 725.479 kb on + strand, within RR42_RS03275 at 725.480 kb on - strand, within RR42_RS03275 at 725.612 kb on + strand at 725.613 kb on - strand at 725.667 kb on + strand at 725.667 kb on + strand at 725.667 kb on + strand at 725.667 kb on + strand at 725.668 kb on - strand at 725.700 kb on - strand at 726.067 kb on - strand, within RR42_RS03280
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 723,918 + RR42_RS03265 0.53 -0.9 723,918 + RR42_RS03265 0.53 -1.5 723,919 - RR42_RS03265 0.54 -2.8 723,988 - RR42_RS03265 0.59 -0.2 724,138 + RR42_RS03265 0.71 -2.3 724,139 - RR42_RS03265 0.71 -1.2 724,293 + RR42_RS03265 0.83 +2.5 724,293 + RR42_RS03265 0.83 +2.4 724,293 + RR42_RS03265 0.83 +1.5 724,294 - RR42_RS03265 0.83 -0.3 724,294 - RR42_RS03265 0.83 -0.5 724,294 - RR42_RS03265 0.83 +1.4 724,297 - RR42_RS03265 0.83 +1.1 724,442 + -2.5 724,442 + +0.8 724,442 + +1.1 724,755 + +1.3 724,755 + +1.3 724,756 - -0.2 724,756 - +1.9 724,756 - +0.1 724,764 + -1.1 724,764 + -0.8 724,765 - +1.9 724,765 - +0.3 724,765 - -0.4 724,765 - -1.4 724,874 - +1.5 724,879 - +1.6 724,888 + +2.6 724,888 + -1.5 725,166 + -1.5 725,166 + +1.5 725,167 - +1.7 725,167 - +0.5 725,167 - +2.5 725,167 - +0.2 725,187 + -2.4 725,281 + RR42_RS03275 0.23 +0.6 725,290 + RR42_RS03275 0.25 -0.1 725,290 + RR42_RS03275 0.25 +0.2 725,290 + RR42_RS03275 0.25 +1.3 725,290 + RR42_RS03275 0.25 -3.1 725,290 + RR42_RS03275 0.25 +1.1 725,290 + RR42_RS03275 0.25 -1.4 725,291 - RR42_RS03275 0.25 +0.1 725,291 - RR42_RS03275 0.25 -0.3 725,291 - RR42_RS03275 0.25 +0.6 725,479 + RR42_RS03275 0.65 +0.0 725,480 - RR42_RS03275 0.65 -3.2 725,612 + -0.1 725,613 - -1.3 725,667 + +1.2 725,667 + -2.6 725,667 + -1.4 725,667 + +1.5 725,668 - -3.6 725,700 - -0.2 726,067 - RR42_RS03280 0.34 +0.4
Or see this region's nucleotide sequence