Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03010

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03000 and RR42_RS03005 are separated by 162 nucleotidesRR42_RS03005 and RR42_RS03010 are separated by 44 nucleotidesRR42_RS03010 and RR42_RS03015 are separated by 45 nucleotides RR42_RS03000: RR42_RS03000 - ABC transporter substrate-binding protein, at 664,589 to 665,557 _RS03000 RR42_RS03005: RR42_RS03005 - 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 665,720 to 666,484 _RS03005 RR42_RS03010: RR42_RS03010 - acetyl-CoA acetyltransferase, at 666,529 to 667,707 _RS03010 RR42_RS03015: RR42_RS03015 - enoyl-CoA hydratase, at 667,753 to 668,550 _RS03015 Position (kb) 666 667 668Strain fitness (log2 ratio) -2 -1 0 1 2 3at 665.539 kb on + strandat 665.540 kb on - strandat 665.791 kb on + strandat 665.792 kb on - strandat 665.902 kb on + strand, within RR42_RS03005at 665.903 kb on - strand, within RR42_RS03005at 666.006 kb on + strand, within RR42_RS03005at 666.033 kb on + strand, within RR42_RS03005at 666.033 kb on + strand, within RR42_RS03005at 666.489 kb on + strandat 666.770 kb on + strand, within RR42_RS03010at 667.379 kb on + strand, within RR42_RS03010at 667.379 kb on + strand, within RR42_RS03010at 667.867 kb on - strand, within RR42_RS03015at 667.969 kb on + strand, within RR42_RS03015at 667.969 kb on + strand, within RR42_RS03015at 667.972 kb on + strand, within RR42_RS03015at 667.972 kb on + strand, within RR42_RS03015at 667.972 kb on + strand, within RR42_RS03015at 667.973 kb on - strand, within RR42_RS03015at 668.198 kb on - strand, within RR42_RS03015

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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665,539 + -0.3
665,540 - +1.3
665,791 + +2.4
665,792 - +1.5
665,902 + RR42_RS03005 0.24 -1.6
665,903 - RR42_RS03005 0.24 +0.6
666,006 + RR42_RS03005 0.37 -0.2
666,033 + RR42_RS03005 0.41 +0.6
666,033 + RR42_RS03005 0.41 -1.7
666,489 + +1.5
666,770 + RR42_RS03010 0.20 -1.6
667,379 + RR42_RS03010 0.72 +0.2
667,379 + RR42_RS03010 0.72 +0.3
667,867 - RR42_RS03015 0.14 +3.2
667,969 + RR42_RS03015 0.27 -0.2
667,969 + RR42_RS03015 0.27 +0.1
667,972 + RR42_RS03015 0.27 +0.5
667,972 + RR42_RS03015 0.27 -2.7
667,972 + RR42_RS03015 0.27 +0.9
667,973 - RR42_RS03015 0.28 +0.6
668,198 - RR42_RS03015 0.56 +0.2

Or see this region's nucleotide sequence