Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02900 and RR42_RS02905 are separated by 220 nucleotides RR42_RS02905 and RR42_RS02910 are separated by 34 nucleotides
RR42_RS02900: RR42_RS02900 - LysR family transcriptional regulator, at 646,769 to 647,710
_RS02900
RR42_RS02905: RR42_RS02905 - MFS transporter, at 647,931 to 648,929
_RS02905
RR42_RS02910: RR42_RS02910 - 2-aminoadipate aminotransferase, at 648,964 to 650,214
_RS02910
Position (kb) 647
648
649 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 646.965 kb on + strand, within RR42_RS02900 at 647.025 kb on - strand, within RR42_RS02900 at 647.046 kb on + strand, within RR42_RS02900 at 647.047 kb on - strand, within RR42_RS02900 at 647.250 kb on + strand, within RR42_RS02900 at 647.283 kb on + strand, within RR42_RS02900 at 647.283 kb on + strand, within RR42_RS02900 at 647.284 kb on - strand, within RR42_RS02900 at 647.489 kb on + strand, within RR42_RS02900 at 647.496 kb on + strand, within RR42_RS02900 at 647.496 kb on + strand, within RR42_RS02900 at 647.497 kb on - strand, within RR42_RS02900 at 647.502 kb on + strand, within RR42_RS02900 at 647.503 kb on - strand, within RR42_RS02900 at 647.791 kb on + strand at 647.791 kb on + strand at 647.791 kb on + strand at 647.791 kb on + strand at 648.024 kb on - strand at 648.201 kb on + strand, within RR42_RS02905 at 648.201 kb on + strand, within RR42_RS02905 at 648.252 kb on + strand, within RR42_RS02905 at 648.388 kb on - strand, within RR42_RS02905 at 648.504 kb on + strand, within RR42_RS02905 at 648.504 kb on + strand, within RR42_RS02905 at 648.504 kb on + strand, within RR42_RS02905 at 648.505 kb on - strand, within RR42_RS02905 at 648.566 kb on + strand, within RR42_RS02905 at 648.624 kb on - strand, within RR42_RS02905 at 649.045 kb on + strand at 649.046 kb on - strand at 649.171 kb on + strand, within RR42_RS02910 at 649.690 kb on + strand, within RR42_RS02910 at 649.888 kb on + strand, within RR42_RS02910
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 646,965 + RR42_RS02900 0.21 +2.1 647,025 - RR42_RS02900 0.27 +0.7 647,046 + RR42_RS02900 0.29 -2.2 647,047 - RR42_RS02900 0.30 +1.3 647,250 + RR42_RS02900 0.51 -1.1 647,283 + RR42_RS02900 0.55 +0.9 647,283 + RR42_RS02900 0.55 +0.8 647,284 - RR42_RS02900 0.55 -0.2 647,489 + RR42_RS02900 0.76 +1.4 647,496 + RR42_RS02900 0.77 -1.3 647,496 + RR42_RS02900 0.77 +1.3 647,497 - RR42_RS02900 0.77 +1.0 647,502 + RR42_RS02900 0.78 -0.2 647,503 - RR42_RS02900 0.78 -2.3 647,791 + -3.3 647,791 + +1.0 647,791 + +1.9 647,791 + -2.2 648,024 - +0.8 648,201 + RR42_RS02905 0.27 -2.6 648,201 + RR42_RS02905 0.27 -0.9 648,252 + RR42_RS02905 0.32 -1.5 648,388 - RR42_RS02905 0.46 +0.9 648,504 + RR42_RS02905 0.57 +1.2 648,504 + RR42_RS02905 0.57 -1.2 648,504 + RR42_RS02905 0.57 -1.1 648,505 - RR42_RS02905 0.57 +0.4 648,566 + RR42_RS02905 0.64 -3.0 648,624 - RR42_RS02905 0.69 +0.8 649,045 + -3.5 649,046 - +2.7 649,171 + RR42_RS02910 0.17 -2.2 649,690 + RR42_RS02910 0.58 -1.8 649,888 + RR42_RS02910 0.74 -0.1
Or see this region's nucleotide sequence